
Microexon ID | Sb_1:5776301-5776309:- |
Species | Sorghum Bicolor | Coordinates | 1:5776301..5776309 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTATCTCG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGACAACAGCTGCAGGAAGGAAGGCCAGGCCCGGAAAGGCCGGCAAGTTTATCTCGGCGGGTATGACATGGAGGAGAAGGCCGCGAGGGCGTATGACCTGGCCGCG |
Microexon-tag Amino Acid Seq | WDNSCRKEGQARKGRQVYLGGYDMEEKAARAYDLAA |
Microexon-tag spanning region | 5776116-5776539 |
Microexon-tag prediction score | 0.9607 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | EER93382x |
Reference Transcript ID | EER93382 |
Gene ID | SORBI_3001G075700 |
Gene Name | NA |
Transcript ID | EER93382 |
Protein ID | |
Gene ID | SORBI_3001G075700 |
Gene Name | |
Pfam domain motif | AP2 |
Motif E-value | 2.40E-11 |
Motif start | 298 |
Motif end | 357 |
Protein seq | >EER93382 MTSNSSQNISSCSTGGSDAAVGSSWLGFSLSPHMAATMDGGAADGSRGVPGQQPHGGLCYPPVVCSSPAPFGYALGGGGQ DCPANGGGGFYPGLSSMPLNSDGSLCIVEALHRSEQERHGVMVSPKLEDFLGASTAMALSLDSSSFYYGGGHGHHAHGDG HGHDQGGYLQPLQCAVIPSSGGHDVYGGHSHLVDQQSAVAMAESWFSARGGGYDVNGGGAGDIVPLQGHTHPLALSMSSG TGSQSSSITMQVGAHADAVTEYVATDGSKKRGGGGGNAGQKQAVVHRKSIDTFGQRTSKYRGVTRHRWTGRYEAHLWDNS CRKEGQARKGRQVYLGGYDMEEKAARAYDLAALKYWGKSTHVNFPVEDYREELEEMENMTRQEYVAHLRRKSSGFSRGAS IYRGVTRHHQHGRWQARIGRVSGNKDLYLGTFTNQEEAAEAYDVAAIKFRGLSAVTNFDITRYDVEKIMESNTLLPGDQV RRKMDGQAASAVSEADAVASATAALVQAGGRCVADTWKIQAAALPAVARGGGGGHEQQQQHQDLLSSEAFSLLHDILSVD AAGTGSGSANAHMSNSSSLAPSVSNSREQSPDRGSGGLAMFFAKPAAAVPRLACPLPLGSWVSPSAVSSARPGVSIAHLP MFAAWTDA* |
CDS seq | >EER93382 ATGACCAGCAACAGCAGCCAGAACATCAGCAGCTGCAGCACCGGCGGAAGCGACGCCGCGGTCGGGAGCAGCTGGCTCGG CTTCTCGCTGTCGCCTCACATGGCGGCGACCATGGACGGCGGCGCGGCCGACGGCTCCAGAGGCGTTCCGGGGCAGCAGC CCCACGGAGGCCTCTGCTACCCTCCGGTCGTCTGCTCCTCGCCCGCGCCCTTCGGCTACGCTCTCGGCGGCGGCGGCCAA GATTGTCCCGCCAATGGTGGCGGGGGTTTCTACCCCGGGCTCTCCTCTATGCCGCTCAACTCCGACGGCTCCCTGTGCAT CGTGGAGGCCCTCCATAGGAGCGAGCAAGAACGTCACGGTGTGATGGTGTCCCCAAAGCTGGAGGATTTCTTGGGGGCGA GCACCGCGATGGCGCTGAGCTTGGACAGCTCCAGCTTCTACTACGGCGGCGGTCACGGCCACCACGCGCACGGTGACGGT CACGGCCATGACCAAGGCGGCTACCTACAGCCGCTGCAGTGCGCCGTGATCCCCAGTTCCGGTGGGCACGACGTGTACGG CGGACACAGTCATCTGGTGGACCAGCAGTCCGCCGTGGCAATGGCGGAGAGCTGGTTCTCAGCCCGCGGCGGCGGCTACG ACGTCAACGGCGGCGGCGCGGGCGACATCGTGCCGCTGCAGGGCCACACGCACCCGCTGGCCCTTTCCATGAGCTCCGGG ACGGGGTCGCAGTCCAGCAGCATCACCATGCAAGTCGGCGCCCACGCCGACGCCGTCACCGAGTACGTCGCCACGGACGG GAGCAAGAAGCGCGGCGGCGGCGGCGGCAACGCCGGGCAGAAGCAGGCCGTCGTCCACCGCAAGTCCATCGACACATTCG GGCAGCGCACGTCCAAGTACCGCGGCGTCACCAGGCATAGGTGGACGGGGAGGTATGAGGCGCACCTCTGGGACAACAGC TGCAGGAAGGAAGGCCAGGCCCGGAAAGGCCGGCAAGTTTATCTCGGCGGGTATGACATGGAGGAGAAGGCCGCGAGGGC GTATGACCTGGCCGCGCTCAAGTACTGGGGCAAATCCACGCACGTAAATTTCCCGGTCGAGGACTACAGGGAAGAGCTGG AGGAGATGGAGAACATGACCAGGCAGGAGTACGTCGCTCACCTGAGAAGGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCC ATCTACCGGGGAGTGACCAGGCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAACAAGGACCT CTACCTGGGAACATTCACCAATCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCGGCCATCAAGTTCCGGGGCCTCAGCG CCGTCACCAACTTCGACATCACGCGGTACGACGTCGAGAAGATCATGGAGAGTAACACGCTGCTCCCGGGCGACCAGGTC CGGCGCAAGATGGATGGCCAGGCCGCCTCCGCGGTCTCGGAGGCCGACGCCGTAGCCAGCGCCACCGCGGCGCTGGTGCA GGCCGGCGGCCGCTGCGTGGCGGACACCTGGAAGATCCAGGCAGCGGCGCTGCCAGCAGTCGCGCGGGGCGGCGGCGGCG GCCATGAGCAGCAGCAGCAGCACCAGGACCTGCTGTCGAGCGAGGCGTTCTCGCTGCTGCACGACATCCTGTCCGTGGAC GCTGCTGGGACGGGGAGCGGCAGTGCCAACGCGCACATGTCGAACTCGTCTTCGCTGGCTCCCAGCGTGAGCAACTCCCG GGAGCAGAGCCCGGACCGGGGCAGCGGCGGCCTCGCCATGTTCTTCGCCAAGCCCGCGGCCGCGGTGCCCAGGCTGGCCT GCCCGCTGCCGCTGGGATCCTGGGTCTCGCCGTCGGCCGTGTCCTCCGCCAGGCCCGGCGTGTCCATCGCGCACCTGCCG ATGTTCGCCGCGTGGACCGACGCATGA |
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