
Microexon ID | Pp_18:3000482-3000490:- |
Species | Physcomitrium patens | Coordinates | 18:3000482..3000490 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTACCTTG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAACAGCAAAGTGAAGCTTGGGCTTGCGAGAAGAGGGCGACAAGTTTACCTTGGAGCCTACACTGATGAAGAACAAGCTGCAAAAGCCCACGACTTAGCAGCT |
Microexon-tag Amino Acid Seq | WDNSKVKLGLARRGRQVYLGAYTDEEQAAKAHDLAA |
Microexon-tag spanning region | 3000029-3000715 |
Microexon-tag prediction score | 0.8773 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c18_3900V3.1x |
Reference Transcript ID | Pp3c18_3900V3.1 |
Gene ID | Pp3c18_3900 |
Gene Name | NA |
Transcript ID | Pp3c18_3900V3.1 |
Protein ID | Pp3c18_3900V3.1 |
Gene ID | Pp3c18_3900 |
Gene Name | NA |
Pfam domain motif | AP2 |
Motif E-value | 1.1e-10 |
Motif start | 979 |
Motif end | 1038 |
Protein seq | >Pp3c18_3900V3.1 MGVVEERLDRFVSRTVDMEGAVQDQSETETRNGMETVLQRIRATPWERNDTKNRIELGTVPAESLNSTHAYAVEERQASD SITVQWATCVAPNLATFEERNTVGISGQYEKTAEIIQPSLCALGSGVYLKQYRSASEKDVNDNKLELYALDNLDASDLCV SELADHQNKFIILPEWPNCYQARGQETFIAPPTDSIINSTTRRVAHQIECEPVESDIEVTEAHRLFLADELLSAGQGVLE EFDYPPLPKQPSMGQSSSSRCTEKRGIDIDESEGISSQALRRKYLDSEHFEAHSRVLSTSSLQNPDSGQIDINSAFRAEV IDEDEFEEHRSLEQQSEGRIENGIRFLSHYKMVKEHENGNEVKFGTTVQDIDHQNNSKANGDPCVLVGNYDNLGELEDEV LEKTMGWFPVEESCNEGNDPTLSVRWILDEPPTAADLPHLESLLEISPSKFWSPESESGKRTSVHFGYLCRSESSQSPHS IQYFLNDSPASSPEVTRTIFSGVPGTINSSKEPKHHCSQKRPAMHGAIQKIYSPCMDTAIPWTWRESMETNMKSPSLGSG RKFAQVQICVPHVSPGFSEDKRGNLTSREQNVISTPTQDHTHQETGCLSNFTKSDGAVHRLMSQHGKNLVVDFLKVGPTT QERIEAIRNDTELRDTFVPPSSKLWVQVENPTMPSDNMRDQFSARLSDKEGTNASSSLELQIPQGNRLTGTADAPLQPLS SPVKPEVVLQVHKNCKRRRHAELLPLADISNHPNLAARLRDSLHEKLESQLEFPNTLLELLNDERPVSEQCPQNLAPGNA TWSSPGVPRVSRKRSSRVTTPKDMRPRVSNMLIDDKMLQSATETPIKDHYTCKRGKKITKSAFKELQTFPRNVKLRLLMP DPASCENDMIEMTNQEGRNVKSPILTKAVKPLRLIKTSPAKGYSWTRIRTTPKSNAVVRCETNIEESVTGEERHEVKGKS LSKGSPDIETNKIAVLRSSKYRGVTRHRHTGRFEAHLWDNSKVKLGLARRGRQVYLGAYTDEEQAAKAHDLAALKYWGPG VHTNFPPSLYEEELKTMKNLTKEDYILLLRRKSPGFTRGISKYRGVTRHHQEGRWEARIGRHSGAKYHYLGTYDTEEEAA VAYDRAAVLHRGPNAVTNFDISNYIKRKTKNPKTEITVCPPQM* |
CDS seq | >Pp3c18_3900V3.1 ATGGGAGTCGTAGAAGAACGGCTGGACAGGTTTGTCTCCAGGACTGTGGACATGGAAGGGGCTGTACAGGACCAATCAGA AACCGAAACGAGAAACGGCATGGAAACAGTACTTCAGCGGATACGAGCTACACCATGGGAGCGCAATGATACTAAAAATA GGATCGAGCTTGGGACCGTGCCAGCGGAAAGTCTAAACTCAACCCATGCTTACGCTGTAGAAGAACGGCAAGCTAGTGAT TCAATAACTGTACAATGGGCAACATGTGTTGCTCCAAACCTAGCAACATTTGAAGAGCGGAACACAGTGGGAATTAGCGG CCAATATGAGAAGACTGCGGAAATAATTCAACCATCGTTGTGCGCATTAGGATCCGGGGTATACCTCAAGCAGTATCGTT CAGCATCGGAAAAGGATGTAAATGACAACAAATTGGAATTATATGCCTTAGATAACTTAGACGCTAGTGACTTATGTGTC AGTGAATTAGCTGACCATCAGAACAAGTTCATCATATTGCCGGAATGGCCAAATTGTTACCAAGCTCGTGGTCAAGAGAC GTTCATCGCACCTCCAACAGACTCGATCATCAATTCAACCACCAGACGAGTTGCCCATCAGATTGAATGCGAGCCAGTTG AAAGTGACATTGAGGTTACGGAGGCGCACAGACTGTTTCTTGCAGACGAATTACTGTCAGCAGGCCAGGGCGTGCTTGAA GAATTCGACTACCCTCCACTTCCAAAACAACCCTCCATGGGCCAATCTAGTAGCAGTCGATGCACCGAAAAGAGAGGTAT CGATATTGATGAGAGTGAAGGCATTAGTAGCCAGGCATTAAGAAGGAAGTATCTTGACAGCGAGCATTTCGAAGCACACT CTAGGGTATTATCTACCAGTTCCCTGCAGAACCCTGACAGTGGCCAAATTGACATCAACAGCGCGTTTCGCGCAGAAGTA ATAGATGAGGACGAGTTCGAAGAACACCGAAGTCTGGAACAACAATCTGAAGGCAGAATTGAGAATGGTATTAGGTTTCT GAGCCACTATAAAATGGTGAAAGAGCACGAAAATGGTAATGAGGTGAAATTTGGGACAACTGTGCAGGATATTGACCACC AAAACAATAGCAAAGCTAATGGAGATCCCTGTGTATTGGTTGGAAACTATGACAACTTGGGTGAGCTGGAGGACGAGGTC CTGGAGAAGACAATGGGTTGGTTCCCAGTGGAGGAGTCGTGCAATGAGGGCAACGATCCTACCCTTTCAGTGCGTTGGAT ACTTGACGAACCGCCAACTGCGGCTGATTTACCTCATTTGGAAAGTTTGCTGGAAATCTCACCCTCGAAATTTTGGAGTC CGGAATCTGAGTCAGGAAAACGAACGTCTGTCCACTTCGGATACCTTTGCCGTTCTGAGTCATCGCAATCGCCGCACTCA ATCCAATATTTTTTAAACGATTCACCTGCTTCATCTCCGGAGGTGACAAGAACGATCTTTAGTGGCGTCCCTGGTACAAT CAATTCATCAAAGGAACCGAAGCACCACTGTTCGCAAAAACGCCCTGCTATGCACGGCGCAATACAGAAAATTTATTCAC CATGCATGGATACAGCGATCCCTTGGACTTGGCGAGAATCCATGGAGACAAACATGAAGTCACCTTCCTTAGGTTCTGGT AGAAAATTTGCTCAAGTCCAAATTTGTGTTCCACATGTGTCCCCTGGGTTTTCAGAGGACAAACGTGGGAATCTCACTAG CAGAGAGCAGAATGTGATTTCAACTCCTACTCAAGATCATACCCATCAAGAAACAGGCTGCTTATCGAATTTCACCAAAT CAGATGGTGCCGTTCACAGATTGATGTCTCAGCATGGGAAAAACCTAGTTGTAGACTTTCTGAAAGTAGGGCCAACGACT CAGGAAAGGATTGAAGCCATAAGGAACGACACAGAACTCAGAGATACTTTCGTGCCACCGAGTTCAAAATTGTGGGTTCA AGTTGAGAATCCGACAATGCCATCAGATAACATGCGGGATCAATTTTCTGCAAGGCTCTCTGACAAGGAAGGAACGAACG CTTCATCGTCTTTGGAACTCCAGATTCCACAAGGAAACCGATTGACGGGTACTGCTGATGCTCCTCTGCAGCCTCTATCT TCACCCGTAAAGCCTGAAGTCGTACTCCAAGTTCACAAAAATTGCAAACGGAGAAGACATGCGGAATTGCTCCCACTCGC GGATATTTCAAACCATCCGAATTTGGCTGCGAGGTTAAGAGATTCGCTACATGAGAAGCTAGAGTCACAGCTTGAATTTC CAAATACACTCTTGGAATTACTCAATGATGAGCGTCCAGTTTCCGAGCAGTGTCCACAAAATTTGGCTCCAGGTAACGCA ACGTGGTCAAGCCCGGGCGTCCCTCGTGTTTCGCGAAAGCGAAGCAGTCGAGTCACAACGCCGAAAGACATGAGACCGAG AGTGTCGAACATGCTTATCGACGATAAGATGTTACAGTCTGCGACAGAAACTCCGATAAAAGACCACTACACTTGTAAAA GAGGAAAGAAGATCACCAAAAGCGCGTTTAAGGAGTTGCAAACGTTCCCAAGAAATGTCAAATTACGACTTCTCATGCCT GACCCAGCTAGCTGTGAGAATGATATGATAGAAATGACGAACCAAGAAGGTAGAAATGTTAAGTCTCCGATCCTAACGAA GGCAGTTAAACCTCTGCGGCTAATAAAGACTAGTCCTGCCAAAGGTTATTCTTGGACCAGGATTAGAACGACGCCTAAAA GCAACGCAGTTGTCAGGTGTGAAACGAACATAGAAGAAAGTGTTACAGGAGAAGAGAGACATGAAGTTAAAGGAAAGAGT CTGTCAAAAGGATCACCAGATATTGAAACGAACAAAATTGCCGTTCTCCGGAGCTCGAAGTACAGGGGTGTAACAAGGCA TCGACACACAGGGCGATTTGAGGCGCACTTATGGGATAACAGCAAAGTGAAGCTTGGGCTTGCGAGAAGAGGGCGACAAG TTTACCTTGGAGCCTACACTGATGAAGAACAAGCTGCAAAAGCCCACGACTTAGCAGCTTTGAAGTATTGGGGCCCTGGT GTGCACACCAACTTCCCGCCCAGTCTGTATGAGGAGGAGTTGAAGACAATGAAAAACCTAACTAAAGAGGACTACATTCT TCTTTTGCGCAGGAAAAGTCCCGGGTTCACTAGGGGAATATCAAAATATCGTGGAGTTACAAGGCATCACCAAGAGGGAC GCTGGGAAGCCCGCATTGGAAGACACTCGGGCGCAAAGTATCATTACCTAGGCACCTATGACACAGAAGAAGAAGCAGCC GTAGCTTATGACAGAGCTGCAGTTCTTCACCGTGGACCCAATGCTGTCACGAACTTTGACATATCAAATTACATCAAAAG AAAAACCAAGAACCCCAAAACTGAAATCACTGTATGCCCACCTCAAATGTGA |
Microexon DNA seq | TTTACCTTG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAACAGCAAAGTGAAGCTTGGGCTTGCGAGAAGAGGGCGACAAGTTTACCTTGGAGCCTACACTGATGAAGAACAAGCTGCAAAAGCCCACGACTTAGCAGCT |
Microexon-tag Amino Acid seq | WDNSKVKLGLARRGRQVYLGAYTDEEQAAKAHDLAA |
Transcript ID | Pp3c18_3900V3.1 |
Gene ID | Pp.9295 |
Gene Name | NA |
Pfam domain motif | AP2 |
Motif E-value | 1.1e-10 |
Motif start | 979 |
Motif end | 1038 |
Protein seq | >Pp3c18_3900V3.1 MGVVEERLDRFVSRTVDMEGAVQDQSETETRNGMETVLQRIRATPWERNDTKNRIELGTVPAESLNSTHAYAVEERQASD SITVQWATCVAPNLATFEERNTVGISGQYEKTAEIIQPSLCALGSGVYLKQYRSASEKDVNDNKLELYALDNLDASDLCV SELADHQNKFIILPEWPNCYQARGQETFIAPPTDSIINSTTRRVAHQIECEPVESDIEVTEAHRLFLADELLSAGQGVLE EFDYPPLPKQPSMGQSSSSRCTEKRGIDIDESEGISSQALRRKYLDSEHFEAHSRVLSTSSLQNPDSGQIDINSAFRAEV IDEDEFEEHRSLEQQSEGRIENGIRFLSHYKMVKEHENGNEVKFGTTVQDIDHQNNSKANGDPCVLVGNYDNLGELEDEV LEKTMGWFPVEESCNEGNDPTLSVRWILDEPPTAADLPHLESLLEISPSKFWSPESESGKRTSVHFGYLCRSESSQSPHS IQYFLNDSPASSPEVTRTIFSGVPGTINSSKEPKHHCSQKRPAMHGAIQKIYSPCMDTAIPWTWRESMETNMKSPSLGSG RKFAQVQICVPHVSPGFSEDKRGNLTSREQNVISTPTQDHTHQETGCLSNFTKSDGAVHRLMSQHGKNLVVDFLKVGPTT QERIEAIRNDTELRDTFVPPSSKLWVQVENPTMPSDNMRDQFSARLSDKEGTNASSSLELQIPQGNRLTGTADAPLQPLS SPVKPEVVLQVHKNCKRRRHAELLPLADISNHPNLAARLRDSLHEKLESQLEFPNTLLELLNDERPVSEQCPQNLAPGNA TWSSPGVPRVSRKRSSRVTTPKDMRPRVSNMLIDDKMLQSATETPIKDHYTCKRGKKITKSAFKELQTFPRNVKLRLLMP DPASCENDMIEMTNQEGRNVKSPILTKAVKPLRLIKTSPAKGYSWTRIRTTPKSNAVVRCETNIEESVTGEERHEVKGKS LSKGSPDIETNKIAVLRSSKYRGVTRHRHTGRFEAHLWDNSKVKLGLARRGRQVYLGAYTDEEQAAKAHDLAALKYWGPG VHTNFPPSLYEEELKTMKNLTKEDYILLLRRKSPGFTRGISKYRGVTRHHQEGRWEARIGRHSGAKYHYLGTYDTEEEAA VAYDRAAVLHRGPNAVTNFDISNYIKRKTKNPKTEITVCPPQM* |
CDS seq | >Pp3c18_3900V3.1 ATGGGAGTCGTAGAAGAACGGCTGGACAGGTTTGTCTCCAGGACTGTGGACATGGAAGGGGCTGTACAGGACCAATCAGA AACCGAAACGAGAAACGGCATGGAAACAGTACTTCAGCGGATACGAGCTACACCATGGGAGCGCAATGATACTAAAAATA GGATCGAGCTTGGGACCGTGCCAGCGGAAAGTCTAAACTCAACCCATGCTTACGCTGTAGAAGAACGGCAAGCTAGTGAT TCAATAACTGTACAATGGGCAACATGTGTTGCTCCAAACCTAGCAACATTTGAAGAGCGGAACACAGTGGGAATTAGCGG CCAATATGAGAAGACTGCGGAAATAATTCAACCATCGTTGTGCGCATTAGGATCCGGGGTATACCTCAAGCAGTATCGTT CAGCATCGGAAAAGGATGTAAATGACAACAAATTGGAATTATATGCCTTAGATAACTTAGACGCTAGTGACTTATGTGTC AGTGAATTAGCTGACCATCAGAACAAGTTCATCATATTGCCGGAATGGCCAAATTGTTACCAAGCTCGTGGTCAAGAGAC GTTCATCGCACCTCCAACAGACTCGATCATCAATTCAACCACCAGACGAGTTGCCCATCAGATTGAATGCGAGCCAGTTG AAAGTGACATTGAGGTTACGGAGGCGCACAGACTGTTTCTTGCAGACGAATTACTGTCAGCAGGCCAGGGCGTGCTTGAA GAATTCGACTACCCTCCACTTCCAAAACAACCCTCCATGGGCCAATCTAGTAGCAGTCGATGCACCGAAAAGAGAGGTAT CGATATTGATGAGAGTGAAGGCATTAGTAGCCAGGCATTAAGAAGGAAGTATCTTGACAGCGAGCATTTCGAAGCACACT CTAGGGTATTATCTACCAGTTCCCTGCAGAACCCTGACAGTGGCCAAATTGACATCAACAGCGCGTTTCGCGCAGAAGTA ATAGATGAGGACGAGTTCGAAGAACACCGAAGTCTGGAACAACAATCTGAAGGCAGAATTGAGAATGGTATTAGGTTTCT GAGCCACTATAAAATGGTGAAAGAGCACGAAAATGGTAATGAGGTGAAATTTGGGACAACTGTGCAGGATATTGACCACC AAAACAATAGCAAAGCTAATGGAGATCCCTGTGTATTGGTTGGAAACTATGACAACTTGGGTGAGCTGGAGGACGAGGTC CTGGAGAAGACAATGGGTTGGTTCCCAGTGGAGGAGTCGTGCAATGAGGGCAACGATCCTACCCTTTCAGTGCGTTGGAT ACTTGACGAACCGCCAACTGCGGCTGATTTACCTCATTTGGAAAGTTTGCTGGAAATCTCACCCTCGAAATTTTGGAGTC CGGAATCTGAGTCAGGAAAACGAACGTCTGTCCACTTCGGATACCTTTGCCGTTCTGAGTCATCGCAATCGCCGCACTCA ATCCAATATTTTTTAAACGATTCACCTGCTTCATCTCCGGAGGTGACAAGAACGATCTTTAGTGGCGTCCCTGGTACAAT CAATTCATCAAAGGAACCGAAGCACCACTGTTCGCAAAAACGCCCTGCTATGCACGGCGCAATACAGAAAATTTATTCAC CATGCATGGATACAGCGATCCCTTGGACTTGGCGAGAATCCATGGAGACAAACATGAAGTCACCTTCCTTAGGTTCTGGT AGAAAATTTGCTCAAGTCCAAATTTGTGTTCCACATGTGTCCCCTGGGTTTTCAGAGGACAAACGTGGGAATCTCACTAG CAGAGAGCAGAATGTGATTTCAACTCCTACTCAAGATCATACCCATCAAGAAACAGGCTGCTTATCGAATTTCACCAAAT CAGATGGTGCCGTTCACAGATTGATGTCTCAGCATGGGAAAAACCTAGTTGTAGACTTTCTGAAAGTAGGGCCAACGACT CAGGAAAGGATTGAAGCCATAAGGAACGACACAGAACTCAGAGATACTTTCGTGCCACCGAGTTCAAAATTGTGGGTTCA AGTTGAGAATCCGACAATGCCATCAGATAACATGCGGGATCAATTTTCTGCAAGGCTCTCTGACAAGGAAGGAACGAACG CTTCATCGTCTTTGGAACTCCAGATTCCACAAGGAAACCGATTGACGGGTACTGCTGATGCTCCTCTGCAGCCTCTATCT TCACCCGTAAAGCCTGAAGTCGTACTCCAAGTTCACAAAAATTGCAAACGGAGAAGACATGCGGAATTGCTCCCACTCGC GGATATTTCAAACCATCCGAATTTGGCTGCGAGGTTAAGAGATTCGCTACATGAGAAGCTAGAGTCACAGCTTGAATTTC CAAATACACTCTTGGAATTACTCAATGATGAGCGTCCAGTTTCCGAGCAGTGTCCACAAAATTTGGCTCCAGGTAACGCA ACGTGGTCAAGCCCGGGCGTCCCTCGTGTTTCGCGAAAGCGAAGCAGTCGAGTCACAACGCCGAAAGACATGAGACCGAG AGTGTCGAACATGCTTATCGACGATAAGATGTTACAGTCTGCGACAGAAACTCCGATAAAAGACCACTACACTTGTAAAA GAGGAAAGAAGATCACCAAAAGCGCGTTTAAGGAGTTGCAAACGTTCCCAAGAAATGTCAAATTACGACTTCTCATGCCT GACCCAGCTAGCTGTGAGAATGATATGATAGAAATGACGAACCAAGAAGGTAGAAATGTTAAGTCTCCGATCCTAACGAA GGCAGTTAAACCTCTGCGGCTAATAAAGACTAGTCCTGCCAAAGGTTATTCTTGGACCAGGATTAGAACGACGCCTAAAA GCAACGCAGTTGTCAGGTGTGAAACGAACATAGAAGAAAGTGTTACAGGAGAAGAGAGACATGAAGTTAAAGGAAAGAGT CTGTCAAAAGGATCACCAGATATTGAAACGAACAAAATTGCCGTTCTCCGGAGCTCGAAGTACAGGGGTGTAACAAGGCA TCGACACACAGGGCGATTTGAGGCGCACTTATGGGATAACAGCAAAGTGAAGCTTGGGCTTGCGAGAAGAGGGCGACAAG TTTACCTTGGAGCCTACACTGATGAAGAACAAGCTGCAAAAGCCCACGACTTAGCAGCTTTGAAGTATTGGGGCCCTGGT GTGCACACCAACTTCCCGCCCAGTCTGTATGAGGAGGAGTTGAAGACAATGAAAAACCTAACTAAAGAGGACTACATTCT TCTTTTGCGCAGGAAAAGTCCCGGGTTCACTAGGGGAATATCAAAATATCGTGGAGTTACAAGGCATCACCAAGAGGGAC GCTGGGAAGCCCGCATTGGAAGACACTCGGGCGCAAAGTATCATTACCTAGGCACCTATGACACAGAAGAAGAAGCAGCC GTAGCTTATGACAGAGCTGCAGTTCTTCACCGTGGACCCAATGCTGTCACGAACTTTGACATATCAAATTACATCAAAAG AAAAACCAAGAACCCCAAAACTGAAATCACTGTATGCCCACCTCAAATGTGA |