
Microexon ID | Pp_10:16614304-16614312:+ |
Species | Physcomitrium patens | Coordinates | 10:16614304..16614312 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTATCTTG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAAAAATTGTTGGAATCACAAGCAGAACAAGAAGGGACGTCAAGTTTATCTTGGGGCTTACGACGAGGAAGAAGCAGCAGCTCGGGCTTACGACCTCGCTGCT |
Microexon-tag Amino Acid Seq | WDKNCWNHKQNKKGRQVYLGAYDEEEAAARAYDLAA |
Microexon-tag spanning region | 16614030-16614460 |
Microexon-tag prediction score | 0.9605 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c10_24550V3.1x |
Reference Transcript ID | Pp3c10_24550V3.1 |
Gene ID | Pp3c10_24550 |
Gene Name | NA |
Transcript ID | Pp3c10_24550V3.1 |
Protein ID | Pp3c10_24550V3.1 |
Gene ID | Pp3c10_24550 |
Gene Name | NA |
Pfam domain motif | AP2 |
Motif E-value | 3.2e-13 |
Motif start | 55 |
Motif end | 114 |
Protein seq | >Pp3c10_24550V3.1 MELHGRVARAGHSGVMATTFKRTVRQYPARNKTARKPVVEKDSGDARSGPVKRSSGFRGVTRHRWTGRFEAHLWDKNCWN HKQNKKGRQVYLGAYDEEEAAARAYDLAALKYWGPGTIINFKLEDYERQIQEMAVISPEEYLASLRRKSSGFSRGVSKYR GVARHHHNGRWEARIGRVDGNKYLYLGTFATQEEAARAYDLAAIEYRGAAAVTNFDLTYYSQNLSAKQGQAKFIIPEVQH GTSSPSGGATSSCNEMEILGRINRTLESSLDDELQMLRTLGGVTGSNEDLQILEKKSLIPDGASSTDLQFQGNNSQVVNS GGPRRNSFMFTKVKYPSDDGSSNDLLELKHSSGAPSVHLSSTPVNFGANFTYSSQQLTDNTPQDVTDTVNLCMSVTSNLD TQIVNMKRKLESGEDSEEFTLDEISDMETTSTIDLLLATEEDDWHLNQYLNEFSWDSHADSESQLLDSSDTTFCDDGVFP GTCIGLTDYEVISNVLNELPTIPSRHAYTVSAFAA* |
CDS seq | >Pp3c10_24550V3.1 ATGGAGCTTCATGGGCGTGTGGCCCGTGCGGGGCACTCCGGGGTGATGGCAACAACTTTCAAGAGAACAGTGAGGCAGTA TCCAGCCAGGAACAAGACCGCCAGAAAGCCTGTGGTGGAGAAGGATTCTGGTGATGCTCGTAGTGGTCCTGTGAAGCGGA GTTCAGGTTTTCGAGGAGTGACGAGGCACAGGTGGACGGGGAGATTTGAGGCTCACCTCTGGGATAAAAATTGTTGGAAT CACAAGCAGAACAAGAAGGGACGTCAAGTTTATCTTGGGGCTTACGACGAGGAAGAAGCAGCAGCTCGGGCTTACGACCT CGCTGCTCTTAAATATTGGGGACCAGGAACTATAATCAACTTTAAGTTGGAGGACTACGAGCGCCAAATTCAGGAAATGG CTGTAATTTCTCCAGAGGAGTATCTCGCCTCACTGAGAAGGAAGAGCAGTGGTTTCTCAAGGGGCGTTTCGAAATACCGA GGTGTTGCCAGACACCATCATAATGGACGCTGGGAAGCCCGCATTGGACGCGTCGATGGAAACAAGTACCTCTACCTCGG CACCTTTGCCACCCAGGAAGAAGCTGCCCGGGCTTATGATTTGGCAGCAATCGAGTACCGAGGTGCGGCTGCAGTTACAA ACTTTGATCTAACCTACTACAGCCAAAATCTTTCGGCAAAGCAAGGGCAAGCCAAATTCATAATCCCAGAGGTTCAGCAT GGCACAAGCTCCCCTTCAGGTGGGGCAACCAGCTCATGCAATGAAATGGAGATTTTGGGAAGAATCAATCGAACTCTTGA GTCCTCACTTGACGATGAACTGCAGATGCTACGAACCCTCGGTGGAGTCACAGGCTCTAATGAGGACCTTCAGATCCTGG AGAAGAAGAGCCTTATCCCTGATGGAGCCTCCTCAACGGACTTGCAGTTCCAGGGGAACAATAGCCAGGTTGTGAATTCG GGGGGCCCTAGAAGAAACTCGTTCATGTTCACGAAAGTGAAATACCCAAGCGATGATGGCTCAAGTAACGATTTACTCGA GTTGAAACACAGCAGTGGTGCTCCTTCTGTACATTTGTCCTCCACACCTGTCAATTTCGGTGCAAATTTTACCTATTCGT CCCAACAGCTCACGGACAATACACCACAAGATGTCACTGATACCGTGAATCTCTGCATGTCGGTCACATCCAACCTGGAC ACTCAAATTGTGAATATGAAGAGAAAACTTGAAAGTGGAGAGGACTCCGAAGAGTTCACGCTAGATGAGATCTCAGATAT GGAGACAACAAGCACCATAGATCTGTTGCTGGCAACGGAGGAAGATGACTGGCATCTCAATCAGTATCTCAATGAGTTTT CGTGGGACTCACATGCGGATAGCGAATCTCAGCTCTTGGATTCAAGCGATACTACCTTCTGTGACGATGGAGTGTTCCCT GGCACATGCATCGGCTTGACGGATTACGAAGTTATTTCGAATGTGCTGAATGAGCTGCCGACAATACCGTCGAGACATGC CTATACAGTGAGCGCATTCGCGGCCTGA |
Microexon DNA seq | TTTATCTTG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAAAAATTGTTGGAATCACAAGCAGAACAAGAAGGGACGTCAAGTTTATCTTGGGGCTTACGACGAGGAAGAAGCAGCAGCTCGGGCTTACGACCTCGCTGCT |
Microexon-tag Amino Acid seq | WDKNCWNHKQNKKGRQVYLGAYDEEEAAARAYDLAA |
Transcript ID | Pp3c10_24550V3.2 |
Gene ID | Pp.2545 |
Gene Name | NA |
Pfam domain motif | AP2 |
Motif E-value | 3.2e-13 |
Motif start | 55 |
Motif end | 114 |
Protein seq | >Pp3c10_24550V3.2 MELHGRVARAGHSGVMATTFKRTVRQYPARNKTARKPVVEKDSGDARSGPVKRSSGFRGVTRHRWTGRFEAHLWDKNCWN HKQNKKGRQVYLGAYDEEEAAARAYDLAALKYWGPGTIINFKLEDYERQIQEMAVISPEEYLASLRRKSSGFSRGVSKYR GVARHHHNGRWEARIGRVDGNKYLYLGTFATQEEAARAYDLAAIEYRGAAAVTNFDLTYYSQNLSAKQGQAKFIIPEVQH GTSSPSGGATSSCNEMEILGRINRTLESSLDDELQMLRTLGGVTGSNEDLQILEKKSLIPDGASSTDLQFQGNNSQVVNS GGPRRNSFMFTKVKYPSDDGSSNDLLELKHSSGAPSVHLSSTPVNFGANFTYSSQQLTDNTPQDVTDTVNLCMSVTSNLD TQIVNMKRKLESGEDSEEFTLDEISDMETTSTIDLLLATEEDDWHLNQYLNEFSWDSHADSESQLLDSSDTTFCDDGVFP GTCIGLTDYEVISNVLNELPTIPSRHAYTVSAFAA* |
CDS seq | >Pp3c10_24550V3.2 ATGGAGCTTCATGGGCGTGTGGCCCGTGCGGGGCACTCCGGGGTGATGGCAACAACTTTCAAGAGAACAGTGAGGCAGTA TCCAGCCAGGAACAAGACCGCCAGAAAGCCTGTGGTGGAGAAGGATTCTGGTGATGCTCGTAGTGGTCCTGTGAAGCGGA GTTCAGGTTTTCGAGGAGTGACGAGGCACAGGTGGACGGGGAGATTTGAGGCTCACCTCTGGGATAAAAATTGTTGGAAT CACAAGCAGAACAAGAAGGGACGTCAAGTTTATCTTGGGGCTTACGACGAGGAAGAAGCAGCAGCTCGGGCTTACGACCT CGCTGCTCTTAAATATTGGGGACCAGGAACTATAATCAACTTTAAGTTGGAGGACTACGAGCGCCAAATTCAGGAAATGG CTGTAATTTCTCCAGAGGAGTATCTCGCCTCACTGAGAAGGAAGAGCAGTGGTTTCTCAAGGGGCGTTTCGAAATACCGA GGTGTTGCCAGACACCATCATAATGGACGCTGGGAAGCCCGCATTGGACGCGTCGATGGAAACAAGTACCTCTACCTCGG CACCTTTGCCACCCAGGAAGAAGCTGCCCGGGCTTATGATTTGGCAGCAATCGAGTACCGAGGTGCGGCTGCAGTTACAA ACTTTGATCTAACCTACTACAGCCAAAATCTTTCGGCAAAGCAAGGGCAAGCCAAATTCATAATCCCAGAGGTTCAGCAT GGCACAAGCTCCCCTTCAGGTGGGGCAACCAGCTCATGCAATGAAATGGAGATTTTGGGAAGAATCAATCGAACTCTTGA GTCCTCACTTGACGATGAACTGCAGATGCTACGAACCCTCGGTGGAGTCACAGGCTCTAATGAGGACCTTCAGATCCTGG AGAAGAAGAGCCTTATCCCTGATGGAGCCTCCTCAACGGACTTGCAGTTCCAGGGGAACAATAGCCAGGTTGTGAATTCG GGGGGCCCTAGAAGAAACTCGTTCATGTTCACGAAAGTGAAATACCCAAGCGATGATGGCTCAAGTAACGATTTACTCGA GTTGAAACACAGCAGTGGTGCTCCTTCTGTACATTTGTCCTCCACACCTGTCAATTTCGGTGCAAATTTTACCTATTCGT CCCAACAGCTCACGGACAATACACCACAAGATGTCACTGATACCGTGAATCTCTGCATGTCGGTCACATCCAACCTGGAC ACTCAAATTGTGAATATGAAGAGAAAACTTGAAAGTGGAGAGGACTCCGAAGAGTTCACGCTAGATGAGATCTCAGATAT GGAGACAACAAGCACCATAGATCTGTTGCTGGCAACGGAGGAAGATGACTGGCATCTCAATCAGTATCTCAATGAGTTTT CGTGGGACTCACATGCGGATAGCGAATCTCAGCTCTTGGATTCAAGCGATACTACCTTCTGTGACGATGGAGTGTTCCCT GGCACATGCATCGGCTTGACGGATTACGAAGTTATTTCGAATGTGCTGAATGAGCTGCCGACAATACCGTCGAGACATGC CTATACAGTGAGCGCATTCGCGGCCTGA |