
Microexon ID | Os_3:4059542-4059550:- |
Species | Oryza sativa | Coordinates | 3:4059542..4059550 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTACTTAG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGACAACACTTGCAGGAAGGAAGGCCAGACCAGGAAAGGAAGGCAAGTTTACTTAGGTGGCTATGACAAGGAGGAGAAGGCTGCAAGGGCTTATGATTTGGCAGCA |
Microexon-tag Amino Acid Seq | WDNTCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAA |
Microexon-tag spanning region | 4059367-4059742 |
Microexon-tag prediction score | 0.9888 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Os03t0176300-00x |
Reference Transcript ID | Os03t0176300-00 |
Gene ID | Os03g0176300 |
Gene Name | OsPLT10 |
Transcript ID | Os03t0176300-00 |
Protein ID | Os03t0176300-00 |
Gene ID | Os03g0176300 |
Gene Name | OsPLT10 |
Pfam domain motif | AP2 |
Motif E-value | 1.1e-13 |
Motif start | 5 |
Motif end | 63 |
Protein seq | >Os03t0176300-00 QRTSQFRGVTRHRWTGRYEAHLWDNTCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELE EMKHMTRQEFIAHLRRNSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNA VTNFDISKYD |
CDS seq | >Os03t0176300-00 CAGAGGACGTCACAGTTCCGTGGCGTCACCAGACATAGATGGACTGGAAGATACGAGGCTCACTTGTGGGACAACACTTG CAGGAAGGAAGGCCAGACCAGGAAAGGAAGGCAAGTTTACTTAGGTGGCTATGACAAGGAGGAGAAGGCTGCAAGGGCTT ATGATTTGGCAGCACTCAAGTACTGGGGTCCAACAACTCACATAAATTTTCCATTGAGCACTTATGAGAAGGAGCTGGAG GAGATGAAGCACATGACAAGGCAGGAGTTCATTGCCCACTTAAGAAGGAACAGCAGTGGCTTCTCGAGGGGAGCATCCAT GTACAGAGGGGTGACGAGGCATCACCAGCACGGGAGATGGCAGGCAAGGATTGGAAGGGTCGCAGGGAACAAGGACCTGT ATCTCGGCACCTTCAGCACGCAGGAGGAAGCGGCGGAGGCGTACGACATAGCGGCGATCAAGTTCCGCGGCCTGAACGCC GTGACCAACTTCGACATCAGCAAGTACGACGT |
Microexon DNA seq | TTTACTTAG |
Microexon Amino Acid seq | FT* |
Microexon-tag DNA Seq | TGTGGGACAACACTTGCAGGAAGGAAGGCCAGACCAGGAAAGGAAGGCAAGTTTACTTAG |
Microexon-tag Amino Acid seq | CGTTLAGRKARPGKEGKFT* |
Transcript ID | Os.17295.1 |
Gene ID | Os.17295 |
Gene Name | OsPLT10 |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Os.17295.1 MRHRQAAQASCRTTDHLRRSKTISSCLPMASTSWAHRTQWRRRRCTTPAAAAAASSTDPCRSPASSRGSGRQCTCRNGQR RRCRSPCRPLPRARRRCRRRRCRWSASPLRRSGRGRHSSVASPDIDGLEDTRLTCGTTLAGRKARPGKEGKFT* |
CDS seq | >Os.17295.1 ATGCGCCACCGGCAGGCTGCACAGGCGTCCTGCCGGACCACCGACCACCTCCGCCGCAGCAAGACCATATCTTCCTGCCT CCCCATGGCCAGTACTTCCTGGGCCCACCGAACCCAATGGCGCCGGCGCCGATGTACAACGCCGGCGGCGGCGGCGGCGG CGTCGTCGACGGATCCATGTCGATCTCCGGCATCAAGTCGTGGCTCCGGCAGGCAATGTACGTGCCGGAACGGTCAGCGG CGGCGCTGTCGCTCTCCGTGCCGGCCGCTCCCCCGAGCGAGGCGCCGCTGCCGCCGGCGGCGATGCCGGTGGTCCGCAAG CCCGCTCAGACGTTCGGGCAGAGGACGTCACAGTTCCGTGGCGTCACCAGACATAGATGGACTGGAAGATACGAGGCTCA CTTGTGGGACAACACTTGCAGGAAGGAAGGCCAGACCAGGAAAGGAAGGCAAGTTTACTTAG |