
Microexon ID | Os_2:24263820-24263828:+ |
Species | Oryza sativa | Coordinates | 2:24263820..24263828 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTATCTTG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAATAGCTGTAGAAGAGAAGGGCAGAGTCGCAAGGGTAGGCAAGTTTATCTTGGTGGCTATGACAAGGAGGATAAAGCAGCGAGAGCTTATGATTTGGCAGCT |
Microexon-tag Amino Acid Seq | WDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAA |
Microexon-tag spanning region | 24263601-24263969 |
Microexon-tag prediction score | 0.9684 |
Overlapped with the annotated transcript (%) | NA |
New Transcript ID | NA |
Reference Transcript ID | NA |
Gene ID | NA |
Gene Name | NA |
Os_2:24263820-24263828:+ does not have available information here.
Microexon DNA seq | TTTATCTTG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAATAGCTGTAGAAGAGAAGGGCAGAGTCGCAAGGGTAGGCAAGTTTATCTTGGTGGCTATGACAAGGAGGATAAAGCAGCGAGAGCTTATGATTTGGCAGCT |
Microexon-tag Amino Acid seq | WDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAA |
Transcript ID | Os.14936.1 |
Gene ID | Os.14936 |
Gene Name | NA |
Pfam domain motif | AP2 |
Motif E-value | 8.7e-12 |
Motif start | 303 |
Motif end | 361 |
Protein seq | >Os.14936.1 MASANNWLGFSLSGQENPQPHQDSSPPAAIDVSGAGDFYGLPTSQPTAADAHLGVAGHHHNASYGIMEAFNRGAQEAQDW NMRGLDYNGGASELSMLVGSSGGKRAAAVEETEPKLEDFLGGNSFVSEQDHHAAGGFLFSGVPMASSTNSNSGSNTMELS MIKTWLRNNGQVPAGHQPQQQQPAAAAAAAQQQAHEAAEMSTDASASSFGCSSDAMGRSNNGGAVSAAAGGTSSQSLALS MSTGSHSHLPIVVAGGGNASGGAAESTSSENKRASGAMDSPGGGAIEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHL WDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGTTTTTNFPISNYEKELDEMKHMTRQEYIAYLRRNSSGFS RGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESSTLPV GGAARRLKEAADHAEAAGATIWRAADMDGAGVISGLADVGMGAYAASYHHHHHHGWPTIAFQQPPPLAVHYPYGQAPAAP SRGWCKPEQDAAVAAAAHSLQDLQQLHLGSAAAHNFFQASSSSTVYNGGGGGYQGLGGNAFLMPASTVVADQGHSSTATN HGNTCSYGNEEQGKLIGYDAMAMASGAAGGGYQLSQGSASTVSIARANGYSANWSSPFNGAMG* |
CDS seq | >Os.14936.1 ATGGCTTCTGCAAACAACTGGCTGGGCTTCTCGCTCTCCGGCCAAGAGAATCCGCAGCCTCACCAGGATAGCTCGCCTCC GGCAGCCATCGACGTCTCCGGCGCCGGCGACTTCTATGGCCTGCCGACGTCGCAGCCGACGGCGGCCGACGCGCACCTCG GCGTGGCGGGGCATCATCACAACGCCTCGTATGGCATCATGGAGGCCTTCAATAGGGGAGCTCAAGAGGCACAAGATTGG AACATGAGGGGGCTGGACTACAACGGCGGCGCCTCGGAGCTGTCGATGCTCGTCGGCTCCAGCGGCGGCAAGAGGGCGGC GGCGGTGGAGGAGACCGAGCCGAAGCTGGAGGACTTCCTCGGCGGCAACTCGTTCGTCTCCGAGCAAGATCATCACGCGG CGGGGGGCTTCCTCTTCTCCGGCGTCCCGATGGCCAGCAGCACCAACAGCAACAGCGGGAGCAACACTATGGAGCTCTCC ATGATCAAGACCTGGCTCCGGAACAACGGCCAGGTGCCCGCCGGCCACCAGCCGCAGCAGCAGCAGCCGGCGGCCGCGGC CGCCGCCGCGCAGCAGCAGGCGCACGAGGCGGCGGAGATGAGCACCGACGCGAGCGCGAGCAGCTTCGGGTGCTCCTCCG ACGCGATGGGGAGGAGTAACAACGGCGGCGCGGTCTCGGCGGCGGCCGGCGGGACGAGCTCGCAGAGCCTGGCGCTCTCG ATGAGCACGGGCTCGCACTCGCACCTGCCTATCGTCGTCGCCGGCGGCGGGAACGCCAGCGGCGGAGCGGCCGAGAGCAC ATCGTCGGAGAACAAGCGGGCCAGCGGCGCCATGGATTCGCCGGGCGGTGGCGCGATAGAGGCCGTGCCGAGGAAGTCCA TCGACACGTTCGGGCAAAGGACCTCGATATATCGAGGTGTAACAAGGCATAGATGGACAGGGCGATATGAGGCTCATCTC TGGGATAATAGCTGTAGAAGAGAAGGGCAGAGTCGCAAGGGTAGGCAAGTTTATCTTGGTGGCTATGACAAGGAGGATAA AGCAGCGAGAGCTTATGATTTGGCAGCTCTGAAGTATTGGGGCACAACAACAACAACAAATTTCCCAATAAGTAACTATG AAAAAGAGCTAGATGAAATGAAACATATGACCAGGCAGGAGTATATTGCATACCTAAGAAGGAATAGCAGTGGATTTTCT CGTGGTGCATCGAAATATCGTGGTGTAACCAGGCACCATCAGCATGGGAGATGGCAAGCAAGGATAGGGAGGGTTGCAGG AAACAAGGACCTCTACTTAGGCACCTTCAGCACCGAGGAGGAGGCGGCGGAGGCGTACGACATCGCGGCGATCAAGTTCC GGGGGCTCAACGCCGTCACCAACTTTGACATGAGCCGCTACGACGTCAAGAGCATCCTGGAGAGCAGCACGCTGCCGGTG GGCGGCGCGGCGAGGCGGCTGAAGGAGGCGGCGGACCACGCGGAGGCGGCCGGCGCCACCATCTGGCGCGCCGCCGACAT GGACGGCGCCGGCGTCATCTCCGGCCTGGCCGACGTCGGGATGGGCGCCTACGCCGCCTCGTACCACCACCACCACCACC ACGGCTGGCCGACCATCGCGTTCCAGCAGCCGCCGCCGCTCGCCGTGCACTACCCGTACGGCCAGGCGCCGGCGGCGCCG TCGCGCGGGTGGTGCAAGCCCGAGCAGGACGCCGCCGTCGCTGCCGCCGCGCACAGCCTCCAGGACCTCCAGCAGCTGCA CCTCGGCAGCGCCGCCGCCCACAACTTCTTCCAGGCGTCGTCGAGCTCGACGGTCTACAACGGCGGCGGCGGCGGGTACC AGGGCCTCGGTGGCAACGCCTTCTTGATGCCGGCGAGCACCGTCGTGGCCGACCAGGGGCACAGCAGCACGGCCACCAAC CATGGAAACACCTGCAGCTACGGCAACGAGGAGCAGGGGAAGCTCATCGGGTACGACGCCATGGCGATGGCGAGCGGCGC CGCCGGCGGCGGGTACCAGCTGTCGCAGGGCTCGGCGTCGACGGTGAGCATCGCGAGGGCGAACGGCTACTCGGCCAACT GGAGCTCGCCTTTCAATGGCGCCATGGGATGA |