| Microexon ID | Bn_scaffoldC09:60102557-60102565:+ |
| Species | Brassica Napus | Coordinates | scaffoldC09:60102557..60102565 |
| Microexon Cluster ID | MEP21 |
| Size | 9 |
| Phase | 1 |
| Pfam Domain Motif | AP2 |
| Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
| Microexon location in the Microexon-tag | 2 |
| Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
| Logo of Microexon-tag DNA Seq |  |
| Alignment of exons |  |
| Microexon DNA seq | TTTATTTGG |
| Microexon Amino Acid seq | VYLG |
| Microexon-tag DNA Seq | TGGGATAATAGTTGTAAAAGAGAAGGCCAAACGCGCAAAGGAAGACAAGTTTATTTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCCGCA |
| Microexon-tag Amino Acid Seq | WDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAA |
| Microexon-tag spanning region | 60102384-60102756 |
| Microexon-tag prediction score | 0.9664 |
| Overlapped with the annotated transcript (%) | 100 |
| New Transcript ID | BnaC09T0490600ZSx |
| Reference Transcript ID | BnaC09T0490600ZS |
| Gene ID | BnaC09G0490600ZS |
| Gene Name | NA |
| Transcript ID | BnaC09T0490600ZS |
| Protein ID | |
| Gene ID | BnaC09G0490600ZS |
| Gene Name | |
| Pfam domain motif | AP2 |
| Motif E-value | 2.60E-11 |
| Motif start | 211 |
| Motif end | 268 |
| Protein seq | >BnaC09T0490600ZS MNNNWLGFSLSPYEQNHHRKDVYSSTTTTAVDVAGEYCYDPTAASDESSAIQTSFPSPFGVVVDAFTRDNNSHSRDWDIN GSACNNIHNDEQDGPKLENFLGRTTTIYNTNENVGDGSGSGCYGGGDGGGGSLGLSMIKTWLRNQPVDNVDNQENGNAAK GLSLSMNSSTSCDNNNDSNNNVVAQGKTIDDSVEATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRK GRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHH QHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYNVKAILESPSLPIGSAAKRLKEANRP VPSMMMISNNVSESENSASGWQNAAVQHHQGVDLSLLHQHQERYNGYYYNGGNLSSESARACFKQEDDQHHFLSNTQSLM TNIDHQSSVSDDSVTVCGNVVGYGGYQGFAAPVNCDAYAASEFDYNARNHYYFAQQQQTQQSPGGDFPAAMTNNVGSNMY YHGEGGGEVAPTFTVWNDN* |
| CDS seq | >BnaC09T0490600ZS ATGAATAATAACTGGTTAGGCTTTTCTCTCTCTCCTTATGAACAAAATCACCATCGTAAGGACGTCTACTCTTCCACCAC CACAACCGCCGTAGATGTCGCCGGAGAGTACTGTTACGATCCGACCGCTGCCTCCGATGAGTCTTCAGCCATCCAAACAT CGTTTCCTTCTCCCTTTGGTGTCGTCGTCGATGCTTTCACCAGAGACAACAATAGTCACTCCCGAGATTGGGACATCAAT GGTAGTGCATGCAATAACATCCACAACGATGAGCAAGATGGACCAAAGCTTGAGAATTTCCTTGGCCGCACCACCACGAT TTACAACACCAACGAAAACGTTGGAGATGGAAGTGGAAGTGGCTGTTATGGAGGAGGAGACGGTGGTGGTGGCTCACTAG GACTTTCGATGATAAAGACATGGCTGAGAAATCAGCCCGTGGATAATGTTGATAATCAAGAAAATGGCAATGCTGCAAAA GGCCTGTCCCTCTCAATGAACTCATCTACTTCTTGTGATAACAACAACGACAGCAATAACAACGTTGTTGCCCAAGGGAA GACTATTGATGATAGCGTTGAAGCTACACCGAAGAAAACTATTGAGAGTTTTGGACAGAGGACGTCTATATACCGCGGTG TTACAAGGCATCGGTGGACAGGAAGATATGAGGCACATTTATGGGATAATAGTTGTAAAAGAGAAGGCCAAACGCGCAAA GGAAGACAAGTTTATTTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCCGCACTCAAGTATTG GGGAACCACCACTACTACTAACTTCCCCATGAGCGAATATGAAAAAGAGGTAGAAGAGATGAAGCACATGACAAGGCAAG AGTATGTTGCCTCACTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGTGGAGTAACAAGACATCAC CAACATGGAAGATGGCAAGCTAGGATAGGAAGAGTCGCCGGTAACAAAGACCTCTACTTGGGAACTTTTGGCACACAAGA AGAAGCTGCAGAGGCATACGACATTGCGGCCATCAAATTCAGAGGATTAACCGCAGTGACTAACTTCGACATGAACAGAT ACAACGTTAAAGCAATCCTCGAAAGCCCTAGTCTTCCTATTGGTAGCGCCGCAAAACGTCTCAAGGAGGCTAACCGTCCG GTTCCAAGTATGATGATGATCAGTAATAACGTTTCAGAGAGTGAGAATAGTGCTAGCGGTTGGCAAAACGCTGCGGTTCA GCATCATCAGGGAGTAGATTTGAGCTTATTGCACCAACATCAAGAGAGGTACAATGGTTATTATTACAATGGAGGAAACT TGTCATCGGAGAGTGCTAGGGCTTGTTTCAAACAAGAGGATGATCAACACCATTTCTTGAGCAACACGCAGAGCCTCATG ACTAATATCGATCATCAAAGTTCTGTTTCGGATGATTCGGTTACTGTTTGTGGAAATGTTGTTGGTTATGGTGGTTATCA AGGATTTGCAGCCCCGGTTAACTGCGATGCCTACGCTGCTAGTGAGTTTGATTATAACGCAAGAAACCATTATTACTTTG CTCAGCAGCAGCAGACCCAGCAGTCGCCAGGAGGAGATTTTCCCGCGGCAATGACGAATAACGTTGGCTCTAATATGTAT TACCATGGGGAAGGTGGTGGAGAAGTTGCTCCAACATTTACAGTTTGGAACGACAATTAG |
Bn_scaffoldC09:60102557-60102565:+ does not have available information here.