| Microexon ID | Bn_scaffoldA01:28950565-28950573:- |
| Species | Brassica Napus | Coordinates | scaffoldA01:28950565..28950573 |
| Microexon Cluster ID | MEP21 |
| Size | 9 |
| Phase | 1 |
| Pfam Domain Motif | AP2 |
| Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
| Microexon location in the Microexon-tag | 2 |
| Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
| Logo of Microexon-tag DNA Seq |  |
| Alignment of exons |  |
| Microexon DNA seq | TTTACTTGG |
| Microexon Amino Acid seq | VYLG |
| Microexon-tag DNA Seq | TGGGATAATAGTTGTAGAAGAGAAGGCCAGTCTAGGAAAGGAAGACAAGTTTACTTGGGTGGGTATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCCGCA |
| Microexon-tag Amino Acid Seq | WDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAA |
| Microexon-tag spanning region | 28950413-28950761 |
| Microexon-tag prediction score | 0.9636 |
| Overlapped with the annotated transcript (%) | 100 |
| New Transcript ID | BnaA01T0310800ZSx |
| Reference Transcript ID | BnaA01T0310800ZS |
| Gene ID | BnaA01G0310800ZS |
| Gene Name | NA |
| Transcript ID | BnaA01T0310800ZS |
| Protein ID | |
| Gene ID | BnaA01G0310800ZS |
| Gene Name | |
| Pfam domain motif | AP2 |
| Motif E-value | 6.30E-10 |
| Motif start | 177 |
| Motif end | 234 |
| Protein seq | >BnaA01T0310800ZS MNSNNWLGFPLSPNQSSLPPHEYNLGLVSDHMDNPFHTQEWSMINPHGGGEGGEVPKVADFLGVSKPDENQTDHLVAYND SDYYFHTNSLMPSVQSNDVVVACDSNTPNNSYELQESAHNLQSLTLSMGTTGGNNAAAKASPSEATGDNTSSGALAVVET ATPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGPSTTTN FPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYD IAAIKFRGLNAVTNFEINRYDVKAILESSTLPIGGGAAKRLKEAQALESSRKREAEMIALGSSFQYGGGSSSGGSGSSSS RLQLQPYPLSIQQPLEPFLSLQNNDISHYNTNAHDASSFNHHSYIQTQLHLHQQTNNYLQQQSSQNSQQLYNAYLQSNPA LLHGLVSTSIVDNNNGGSNGSYNTAAFLGNHGIGIGSSSTVGSTEEFPTVKTDYDMPPSDSTGEYGGWTGEPVQGSNPGG VFTMWNE* |
| CDS seq | >BnaA01T0310800ZS ATGAATTCAAACAACTGGCTTGGCTTTCCCCTTTCACCAAACCAGTCTTCTTTGCCTCCTCACGAATACAACCTTGGCCT GGTCAGCGACCATATGGACAACCCTTTCCATACACAAGAGTGGAGTATGATCAATCCACACGGCGGAGGAGAAGGAGGAG AGGTTCCCAAGGTGGCTGATTTTCTCGGTGTGAGCAAACCAGACGAAAACCAAACCGACCACCTCGTAGCATACAACGAC TCAGACTACTACTTCCATACCAACAGCTTGATGCCTAGCGTCCAATCAAACGACGTCGTCGTAGCTTGTGACTCTAACAC TCCTAACAATAGCTATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCATTGACTTTGTCCATGGGGACCACCGGTGGTA ATAACGCCGCAGCCAAAGCTTCGCCGTCGGAGGCCACCGGCGATAACACTAGCAGTGGTGCACTAGCCGTTGTTGAGACG GCCACGCCTAGACGTGCTTTGGACACTTTCGGACAACGAACCTCGATATATCGTGGTGTCACAAGGCATCGATGGACCGG TCGATATGAAGCTCACCTGTGGGATAATAGTTGTAGAAGAGAAGGCCAGTCTAGGAAAGGAAGACAAGTTTACTTGGGTG GGTATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCCGCACTTAAGTACTGGGGTCCCTCGACTACTACTAAT TTCCCGATAACTAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCGGCTATTAGAAG GAAAAGTAGTGGATTCTCACGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCATCAACATGGAAGATGGCAAGCAA GGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCAGCAGAAGCTTATGAT ATAGCCGCGATAAAGTTCAGAGGACTCAACGCAGTGACCAACTTCGAGATCAACCGGTACGACGTGAAAGCCATCCTAGA GAGCAGCACTCTTCCCATAGGAGGAGGCGCGGCTAAGCGGCTCAAAGAAGCTCAGGCTCTTGAGTCTTCAAGGAAACGCG AGGCGGAGATGATAGCCCTCGGTTCAAGTTTCCAATATGGTGGTGGCTCGAGCTCAGGAGGCTCTGGCTCCAGCTCATCA AGGCTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCATTGGAGCCTTTTCTATCTCTACAGAACAATGACATCTC TCACTATAATACCAATGCTCATGATGCTTCCTCCTTTAATCACCATAGCTATATCCAGACGCAGCTTCATCTTCACCAAC AAACCAACAATTACTTGCAGCAACAATCGAGTCAGAACTCGCAGCAGCTCTATAACGCTTATCTTCAAAGCAATCCGGCT TTGCTTCATGGTCTTGTCTCTACCTCAATCGTTGACAATAACAATGGAGGATCTAACGGTAGCTACAACACAGCGGCATT TCTTGGGAACCACGGCATTGGTATTGGGTCGAGCTCCACCGTTGGATCTACCGAGGAGTTTCCAACTGTTAAAACAGACT ACGATATGCCTCCGAGTGATAGCACAGGAGAGTACGGTGGTTGGACTGGTGAGCCTGTTCAGGGGTCGAATCCTGGTGGT GTTTTCACTATGTGGAATGAGTGA |
Bn_scaffoldA01:28950565-28950573:- does not have available information here.