
Microexon ID | At_3:7301705-7301713:+ |
Species | Arabidopsis thaliana | Coordinates | 3:7301705..7301713 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTACTTGG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGACAAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTGCA |
Microexon-tag Amino Acid Seq | WDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAA |
Microexon-tag spanning region | 7301524-7301845 |
Microexon-tag prediction score | 0.9664 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT3G20840.1x |
Reference Transcript ID | AT3G20840.1 |
Gene ID | AT3G20840 |
Gene Name | PLT1 |
Transcript ID | AT3G20840.1 |
Protein ID | AT3G20840.1 |
Gene ID | AT3G20840 |
Gene Name | PLT1 |
Pfam domain motif | AP2 |
Motif E-value | 1.8e-11 |
Motif start | 181 |
Motif end | 239 |
Protein seq | >AT3G20840.1 MNSNNWLGFPLSPNNSSLPPHEYNLGLVSDHMDNPFQTQEWNMINPHGGGGDEGGEVPKVADFLGVSKPDENQSNHLVAY NDSDYYFHTNSLMPSVQSNDVVVAACDSNTPNNSSYHELQESAHNLQSLTLSMGTTAGNNVVDKASPSETTGDNASGGAL AVVETATPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGP STTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEA AEAYDIAAIKFRGLNAVTNFEINRYDVKAILESSTLPIGGGAAKRLKEAQALESSRKREAEMIALGSSFQYGGGSSTGSG STSSRLQLQPYPLSIQQPLEPFLSLQNNDISHYNNNNAHDSSSFNHHSYIQTQLHLHQQTNNYLQQQSSQNSQQLYNAYL HSNPALLHGLVSTSIVDNNNNNGGSSGSYNTAAFLGNHGIGIGSSSTVGSTEEFPTVKTDYDMPSSDGTGGYSGWTSESV QGSNPGGVFTMWNE* |
CDS seq | >AT3G20840.1 ATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCGAACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTT GGTCAGCGACCATATGGACAACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGATGAAG GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTCGGTGTGAGCAAACCGGACGAAAACCAATCCAACCACCTAGTAGCTTAC AACGACTCAGACTACTACTTCCATACCAATAGCTTGATGCCTAGCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGA CTCCAATACTCCTAACAACAGTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTTACTTTGTCCATGG GGACCACCGCTGGTAATAATGTTGTAGACAAAGCTTCACCATCCGAGACCACCGGGGATAACGCTAGCGGTGGAGCACTA GCCGTTGTTGAGACGGCCACGCCAAGACGTGCATTGGACACTTTCGGACAACGAACCTCGATCTATCGTGGTGTCACAAG ACATCGATGGACTGGTCGATATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC AAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCT TCAACTACTACTAATTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGT GGCTGCCATTAGAAGGAAAAGTAGTGGATTTTCGAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCA GCAGAAGCTTACGATATAGCTGCAATAAAGTTTAGAGGACTTAATGCAGTGACCAACTTCGAGATCAACCGGTACGACGT GAAAGCCATTCTAGAGAGTAGCACTCTTCCCATCGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTTGAGT CTTCAAGGAAACGCGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGGTGGTGGCTCGAGCACAGGCTCTGGC TCCACCTCATCAAGACTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCATTAGAGCCTTTTCTATCTCTTCAGAA CAATGACATCTCTCATTACAACAACAACAATGCTCACGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAAC TTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAGTCGAGCCAGAACTCTCAGCAGCTCTACAATGCGTATCTT CATAGCAATCCGGCTCTGCTTCATGGACTTGTCTCTACCTCTATCGTTGACAACAATAATAACAATGGAGGCTCTAGTGG GAGCTACAACACTGCAGCATTTCTTGGGAACCACGGTATTGGTATTGGGTCCAGCTCGACTGTTGGATCGACCGAGGAGT TTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAGTGGTTGGACCAGTGAGTCTGTT CAGGGGTCAAACCCTGGTGGTGTTTTCACTATGTGGAATGAGTAA |
Microexon DNA seq | TTTACTTGG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGACAAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTGCA |
Microexon-tag Amino Acid seq | WDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAA |
Transcript ID | AT3G20840.1 |
Gene ID | At.14127 |
Gene Name | PLT1 |
Pfam domain motif | AP2 |
Motif E-value | 1.8e-11 |
Motif start | 181 |
Motif end | 239 |
Protein seq | >AT3G20840.1 MNSNNWLGFPLSPNNSSLPPHEYNLGLVSDHMDNPFQTQEWNMINPHGGGGDEGGEVPKVADFLGVSKPDENQSNHLVAY NDSDYYFHTNSLMPSVQSNDVVVAACDSNTPNNSSYHELQESAHNLQSLTLSMGTTAGNNVVDKASPSETTGDNASGGAL AVVETATPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGP STTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEA AEAYDIAAIKFRGLNAVTNFEINRYDVKAILESSTLPIGGGAAKRLKEAQALESSRKREAEMIALGSSFQYGGGSSTGSG STSSRLQLQPYPLSIQQPLEPFLSLQNNDISHYNNNNAHDSSSFNHHSYIQTQLHLHQQTNNYLQQQSSQNSQQLYNAYL HSNPALLHGLVSTSIVDNNNNNGGSSGSYNTAAFLGNHGIGIGSSSTVGSTEEFPTVKTDYDMPSSDGTGGYSGWTSESV QGSNPGGVFTMWNE* |
CDS seq | >AT3G20840.1 ATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCGAACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTT GGTCAGCGACCATATGGACAACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGATGAAG GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTCGGTGTGAGCAAACCGGACGAAAACCAATCCAACCACCTAGTAGCTTAC AACGACTCAGACTACTACTTCCATACCAATAGCTTGATGCCTAGCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGA CTCCAATACTCCTAACAACAGTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTTACTTTGTCCATGG GGACCACCGCTGGTAATAATGTTGTAGACAAAGCTTCACCATCCGAGACCACCGGGGATAACGCTAGCGGTGGAGCACTA GCCGTTGTTGAGACGGCCACGCCAAGACGTGCATTGGACACTTTCGGACAACGAACCTCGATCTATCGTGGTGTCACAAG ACATCGATGGACTGGTCGATATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC AAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCT TCAACTACTACTAATTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGT GGCTGCCATTAGAAGGAAAAGTAGTGGATTTTCGAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCA GCAGAAGCTTACGATATAGCTGCAATAAAGTTTAGAGGACTTAATGCAGTGACCAACTTCGAGATCAACCGGTACGACGT GAAAGCCATTCTAGAGAGTAGCACTCTTCCCATCGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTTGAGT CTTCAAGGAAACGCGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGGTGGTGGCTCGAGCACAGGCTCTGGC TCCACCTCATCAAGACTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCATTAGAGCCTTTTCTATCTCTTCAGAA CAATGACATCTCTCATTACAACAACAACAATGCTCACGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAAC TTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAGTCGAGCCAGAACTCTCAGCAGCTCTACAATGCGTATCTT CATAGCAATCCGGCTCTGCTTCATGGACTTGTCTCTACCTCTATCGTTGACAACAATAATAACAATGGAGGCTCTAGTGG GAGCTACAACACTGCAGCATTTCTTGGGAACCACGGTATTGGTATTGGGTCCAGCTCGACTGTTGGATCGACCGAGGAGT TTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAGTGGTTGGACCAGTGAGTCTGTT CAGGGGTCAAACCCTGGTGGTGTTTTCACTATGTGGAATGAGTAA |