
Microexon ID | At_1:18978680-18978688:+ |
Species | Arabidopsis thaliana | Coordinates | 1:18978680..18978688 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TCTACTTAG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAATAGCTGTAGAAGAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGAGCATATGATCTAGCTGCA |
Microexon-tag Amino Acid Seq | WDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAA |
Microexon-tag spanning region | 18978478-18978844 |
Microexon-tag prediction score | 0.9659 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT1G51190.1x |
Reference Transcript ID | AT1G51190.1 |
Gene ID | AT1G51190 |
Gene Name | PLT2 |
Transcript ID | AT1G51190.1 |
Protein ID | AT1G51190.1 |
Gene ID | AT1G51190 |
Gene Name | PLT2 |
Pfam domain motif | AP2 |
Motif E-value | 4.4e-13 |
Motif start | 190 |
Motif end | 248 |
Protein seq | >AT1G51190.1 MNSNNWLAFPLSPTHSSLPPHIHSSQNSHFNLGLVNDNIDNPFQNQGWNMINPHGGGGEGGEVPKVADFLGVSKSGDHHT DHNLVPYNDIHQTNASDYYFQTNSLLPTVVTCASNAPNNYELQESAHNLQSLTLSMGSTGAAAAEVATVKASPAETSADN SSSTTNTSGGAIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYD LAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYL GTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSNFHQY GAASGSSSVASSSRLQLQPYPLSIQQPFEHLHHHQPLLTLQNNNDISQYHDSFSYIQTQLHLHQQQTNNYLQSSSHTSQL YNAYLQSNPGLLHGFVSDNNNTSGFLGNNGIGIGSSSTVGSSAEEEFPAVKVDYDMPPSGGATGYGGWNSGESAQGSNPG GVFTMWNE* |
CDS seq | >AT1G51190.1 ATGAATTCTAACAACTGGCTCGCGTTCCCTCTATCACCAACTCACTCTTCTTTGCCGCCTCACATTCACTCTTCACAAAA TTCTCATTTCAATCTAGGTTTGGTCAACGACAATATCGACAACCCTTTTCAAAACCAAGGATGGAATATGATCAATCCAC ATGGTGGAGGCGGCGAAGGTGGAGAGGTTCCAAAAGTGGCTGATTTCTTAGGAGTGAGCAAATCGGGGGATCATCACACC GATCACAACCTCGTACCTTATAACGACATTCATCAAACCAACGCCTCCGACTACTACTTTCAAACCAATAGCTTGTTACC TACAGTCGTCACTTGTGCCTCTAATGCTCCTAATAATTATGAGCTTCAAGAGAGTGCACACAATTTGCAATCTCTCACTC TCTCTATGGGAAGTACTGGAGCTGCCGCTGCAGAAGTCGCCACTGTGAAAGCCTCGCCGGCTGAGACTAGTGCCGATAAT AGTAGCAGCACTACCAACACAAGTGGAGGAGCCATCGTTGAGGCTACACCGAGACGGACTTTGGAAACTTTTGGACAACG AACCTCTATCTATCGTGGAGTTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGAGCATATGAT CTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCGATAACTAACTACGAGAAGGAAGTAGAGGAGAT GAAAAACATGACGAGACAAGAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCCATGTATC GTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGCTGGAAACAAAGATCTCTACTTG GGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGACATAGCTGCGATAAAGTTTCGAGGTCTAAACGCGGTTAC AAACTTTGAGATAAATCGGTATGATGTGAAAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAAC GGCTCAAAGAAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGAAATGATAGCCCTCGGATCAAATTTCCATCAATAT GGTGCAGCGAGCGGCTCGAGCTCTGTTGCTTCCAGCTCTAGGCTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACC TTTTGAGCATCTTCATCATCATCAGCCTTTACTTACTCTACAGAACAACAACGATATCTCTCAGTATCATGATTCCTTTA GTTACATTCAGACGCAGCTTCATCTTCACCAACAACAAACCAACAATTACTTGCAGTCTTCTAGTCACACTTCACAGCTC TACAATGCTTATCTTCAGAGTAACCCTGGTCTGCTTCATGGATTTGTCTCTGATAATAACAACACTTCAGGGTTTCTTGG AAACAATGGGATTGGTATTGGGTCAAGCTCTACCGTTGGATCATCGGCTGAGGAAGAGTTTCCAGCCGTGAAAGTCGATT ACGATATGCCTCCTTCCGGTGGAGCTACAGGGTATGGAGGATGGAATAGTGGAGAGTCTGCTCAAGGATCGAATCCAGGA GGTGTTTTCACGATGTGGAATGAATAA |
Microexon DNA seq | TCTACTTAG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGATAATAGCTGTAGAAGAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGAGCATATGATCTAGCTGCA |
Microexon-tag Amino Acid seq | WDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAA |
Transcript ID | AT1G51190.1 |
Gene ID | At.4323 |
Gene Name | PLT2 |
Pfam domain motif | AP2 |
Motif E-value | 4.4e-13 |
Motif start | 190 |
Motif end | 248 |
Protein seq | >AT1G51190.1 MNSNNWLAFPLSPTHSSLPPHIHSSQNSHFNLGLVNDNIDNPFQNQGWNMINPHGGGGEGGEVPKVADFLGVSKSGDHHT DHNLVPYNDIHQTNASDYYFQTNSLLPTVVTCASNAPNNYELQESAHNLQSLTLSMGSTGAAAAEVATVKASPAETSADN SSSTTNTSGGAIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYD LAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYL GTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSNFHQY GAASGSSSVASSSRLQLQPYPLSIQQPFEHLHHHQPLLTLQNNNDISQYHDSFSYIQTQLHLHQQQTNNYLQSSSHTSQL YNAYLQSNPGLLHGFVSDNNNTSGFLGNNGIGIGSSSTVGSSAEEEFPAVKVDYDMPPSGGATGYGGWNSGESAQGSNPG GVFTMWNE* |
CDS seq | >AT1G51190.1 ATGAATTCTAACAACTGGCTCGCGTTCCCTCTATCACCAACTCACTCTTCTTTGCCGCCTCACATTCACTCTTCACAAAA TTCTCATTTCAATCTAGGTTTGGTCAACGACAATATCGACAACCCTTTTCAAAACCAAGGATGGAATATGATCAATCCAC ATGGTGGAGGCGGCGAAGGTGGAGAGGTTCCAAAAGTGGCTGATTTCTTAGGAGTGAGCAAATCGGGGGATCATCACACC GATCACAACCTCGTACCTTATAACGACATTCATCAAACCAACGCCTCCGACTACTACTTTCAAACCAATAGCTTGTTACC TACAGTCGTCACTTGTGCCTCTAATGCTCCTAATAATTATGAGCTTCAAGAGAGTGCACACAATTTGCAATCTCTCACTC TCTCTATGGGAAGTACTGGAGCTGCCGCTGCAGAAGTCGCCACTGTGAAAGCCTCGCCGGCTGAGACTAGTGCCGATAAT AGTAGCAGCACTACCAACACAAGTGGAGGAGCCATCGTTGAGGCTACACCGAGACGGACTTTGGAAACTTTTGGACAACG AACCTCTATCTATCGTGGAGTTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGAGCATATGAT CTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCGATAACTAACTACGAGAAGGAAGTAGAGGAGAT GAAAAACATGACGAGACAAGAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCCATGTATC GTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGCTGGAAACAAAGATCTCTACTTG GGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGACATAGCTGCGATAAAGTTTCGAGGTCTAAACGCGGTTAC AAACTTTGAGATAAATCGGTATGATGTGAAAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAAC GGCTCAAAGAAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGAAATGATAGCCCTCGGATCAAATTTCCATCAATAT GGTGCAGCGAGCGGCTCGAGCTCTGTTGCTTCCAGCTCTAGGCTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACC TTTTGAGCATCTTCATCATCATCAGCCTTTACTTACTCTACAGAACAACAACGATATCTCTCAGTATCATGATTCCTTTA GTTACATTCAGACGCAGCTTCATCTTCACCAACAACAAACCAACAATTACTTGCAGTCTTCTAGTCACACTTCACAGCTC TACAATGCTTATCTTCAGAGTAACCCTGGTCTGCTTCATGGATTTGTCTCTGATAATAACAACACTTCAGGGTTTCTTGG AAACAATGGGATTGGTATTGGGTCAAGCTCTACCGTTGGATCATCGGCTGAGGAAGAGTTTCCAGCCGTGAAAGTCGATT ACGATATGCCTCCTTCCGGTGGAGCTACAGGGTATGGAGGATGGAATAGTGGAGAGTCTGCTCAAGGATCGAATCCAGGA GGTGTTTTCACGATGTGGAATGAATAA |