
Microexon ID | Sl_7:54987095-54987102:- |
Species | Solanum Lycopersicum | Coordinates | 7:54987095..54987102 |
Microexon Cluster ID | MEP18 |
Size | 8 |
Phase | 1 |
Pfam Domain Motif | DEAD |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,8,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CCTGCWCTRGCAAARMCAGGMATTGTKCTTGTTGTTTSTCCYTTRATAGCHYTRATGGARAAYCARGTTAYGRSMTTGAARGARAAAGGRRTTSCWGCTGAATWTCTC |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | CTCTCATG |
Microexon Amino Acid seq | ALM |
Microexon-tag DNA Seq | CCCGCTTTGACAAAACCAGGAATTGTGCTTGTTGTTAGTCCTTTGATAGCTCTCATGGAAAATCAAGTTTCAACATTGAAAGAAAAAAGGATTCCTGCTGAATTTCTT |
Microexon-tag Amino Acid Seq | PALTKPGIVLVVSPLIALMENQVSTLKEKRIPAEFL |
Microexon-tag spanning region | 54986957-54987278 |
Microexon-tag prediction score | 0.9387 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Solyc07g042015.1.1x |
Reference Transcript ID | Solyc07g042015.1.1 |
Gene ID | Solyc07g042015.1 |
Gene Name | NA |
Transcript ID | Solyc07g042015.1.1 |
Protein ID | |
Gene ID | Solyc07g042015.1 |
Gene Name | |
Pfam domain motif | DEAD |
Motif E-value | 6.50E-26 |
Motif start | 41 |
Motif end | 205 |
Protein seq | >Solyc07g042015.1.1 MNKSLLPLQSNCGREKNVIGKEALVKLLRWHFGHSDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQVPALTKPGIVL VVSPLIALMENQVSTLKEKRIPAEFLSSTQTVLVKNKIYEDIESGKPAVRLLYVTPELIATSGFMSKMTKIHARGLLNLI AVDEAHCISSWGHDFRPSYRKLSSLRSHFPNVPVLALTATAVPKVQKDVIESLNLQNPLVLKSSFNRPNIYYEVRYKDLL DDPYADVCKLLKSCGNVCAIIYCLERTMCDDLAIHITSSGISCHIMLG* |
CDS seq | >Solyc07g042015.1.1 ATGAACAAATCACTATTACCCTTGCAAAGTAATTGTGGACGTGAGAAGAATGTGATTGGGAAGGAAGCTTTAGTCAAACT ATTGAGATGGCATTTTGGACATTCTGATTTCAGGGGGAAGCAATTGGAAGCTATTGAAGCTGTGTTATCAGGAAGGGATT GCTTTTGCCTCATGCCAACTGGTGGAGGGAAATCCATGTGCTATCAGGTCCCCGCTTTGACAAAACCAGGAATTGTGCTT GTTGTTAGTCCTTTGATAGCTCTCATGGAAAATCAAGTTTCAACATTGAAAGAAAAAAGGATTCCTGCTGAATTTCTTTC TTCAACCCAGACAGTTCTAGTGAAAAACAAGATATACGAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACG TGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATT GCCGTTGATGAGGCACATTGCATCTCTTCATGGGGCCATGACTTCAGGCCTAGCTATCGGAAGCTTTCTTCACTGAGAAG TCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAAAGTTCAGAAAGATGTCATAGAGTCATTGA ATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAGTTCGCTATAAAGACCTTTTG GATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTAC TATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTCATATCATGCTGGGCTGA |
Sl_7:54987095-54987102:- does not have available information here.