Microexon ID Sl_7:54987095-54987102:-
Species Solanum   Lycopersicum
Coordinates 7:54987095..54987102
Microexon Cluster ID MEP18
Size 8
Phase 1
Pfam Domain Motif DEAD
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,8,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq CCTGCWCTRGCAAARMCAGGMATTGTKCTTGTTGTTTSTCCYTTRATAGCHYTRATGGARAAYCARGTTAYGRSMTTGAARGARAAAGGRRTTSCWGCTGAATWTCTC
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq CTCTCATG
Microexon Amino Acid seq ALM
Microexon-tag DNA Seq CCCGCTTTGACAAAACCAGGAATTGTGCTTGTTGTTAGTCCTTTGATAGCTCTCATGGAAAATCAAGTTTCAACATTGAAAGAAAAAAGGATTCCTGCTGAATTTCTT
Microexon-tag Amino Acid Seq PALTKPGIVLVVSPLIALMENQVSTLKEKRIPAEFL
Microexon-tag spanning region54986957-54987278
Microexon-tag prediction score0.9387
Overlapped with the annotated transcript (%) 100
New Transcript ID Solyc07g042015.1.1x
Reference Transcript ID Solyc07g042015.1.1
Gene ID Solyc07g042015.1
Gene Name NA
Transcript ID Solyc07g042015.1.1
Protein ID
Gene ID Solyc07g042015.1
Gene Name
Pfam domain motif DEAD
Motif E-value 6.50E-26
Motif start 41
Motif end 205
Protein seq >Solyc07g042015.1.1
MNKSLLPLQSNCGREKNVIGKEALVKLLRWHFGHSDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQVPALTKPGIVL
VVSPLIALMENQVSTLKEKRIPAEFLSSTQTVLVKNKIYEDIESGKPAVRLLYVTPELIATSGFMSKMTKIHARGLLNLI
AVDEAHCISSWGHDFRPSYRKLSSLRSHFPNVPVLALTATAVPKVQKDVIESLNLQNPLVLKSSFNRPNIYYEVRYKDLL
DDPYADVCKLLKSCGNVCAIIYCLERTMCDDLAIHITSSGISCHIMLG*
CDS seq >Solyc07g042015.1.1
ATGAACAAATCACTATTACCCTTGCAAAGTAATTGTGGACGTGAGAAGAATGTGATTGGGAAGGAAGCTTTAGTCAAACT
ATTGAGATGGCATTTTGGACATTCTGATTTCAGGGGGAAGCAATTGGAAGCTATTGAAGCTGTGTTATCAGGAAGGGATT
GCTTTTGCCTCATGCCAACTGGTGGAGGGAAATCCATGTGCTATCAGGTCCCCGCTTTGACAAAACCAGGAATTGTGCTT
GTTGTTAGTCCTTTGATAGCTCTCATGGAAAATCAAGTTTCAACATTGAAAGAAAAAAGGATTCCTGCTGAATTTCTTTC
TTCAACCCAGACAGTTCTAGTGAAAAACAAGATATACGAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACG
TGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATT
GCCGTTGATGAGGCACATTGCATCTCTTCATGGGGCCATGACTTCAGGCCTAGCTATCGGAAGCTTTCTTCACTGAGAAG
TCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAAAGTTCAGAAAGATGTCATAGAGTCATTGA
ATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAGTTCGCTATAAAGACCTTTTG
GATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTAC
TATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTCATATCATGCTGGGCTGA
Sl_7:54987095-54987102:- does not have available information here.