
Microexon ID | Sb_4:65454899-65454906:- |
Species | Sorghum Bicolor | Coordinates | 4:65454899..65454906 |
Microexon Cluster ID | MEP18 |
Size | 8 |
Phase | 1 |
Pfam Domain Motif | DEAD |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,8,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CCTGCWCTRGCAAARMCAGGMATTGTKCTTGTTGTTTSTCCYTTRATAGCHYTRATGGARAAYCARGTTAYGRSMTTGAARGARAAAGGRRTTSCWGCTGAATWTCTC |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | CGCTGATG |
Microexon Amino Acid seq | ALM |
Microexon-tag DNA Seq | CCAGCTCTGGTGAAGACAGGCATTGTTCTTGTCATTTCACCCTTGATAGCGCTGATGGAGAACCAGGTTGCCAGCTTGAAAAATAAAGGGATTCCAGCTGAATTTCTC |
Microexon-tag Amino Acid Seq | PALVKTGIVLVISPLIALMENQVASLKNKGIPAEFL |
Microexon-tag spanning region | 65454762-65455053 |
Microexon-tag prediction score | 0.9575 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | KXG31219x |
Reference Transcript ID | KXG31219 |
Gene ID | SORBI_3004G319400 |
Gene Name | NA |
Transcript ID | KXG31219 |
Protein ID | |
Gene ID | SORBI_3004G319400 |
Gene Name | |
Pfam domain motif | DEAD |
Motif E-value | 1.10E-25 |
Motif start | 38 |
Motif end | 202 |
Protein seq | >KXG31219 MKGVLQIKGASGREKKAPKELESVLNQYFGYSGFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQVPALVKTGIVLVIS PLIALMENQVASLKNKGIPAEFLSSTQASHTKQRIHEDLDTGNPSLKLLYVTPELVATSGFMAKLKKLYNRGLLGLVAID EAHCISTWGHDFRPSYRKLSSLRKQFPDIPLLALTATAVPKVQKDVISSLCLQNPVILRASFNRPNIFYEVRYKDLLDDV YSDISNLLKSSGNACSIIYCLERAACDDLSMHLSQQGVSSAAYHAGLNSKVRSSVLDDWLSSRTQVVVATVAFGMGIDRQ DVRIVCHFNLPKSMESFYQESGRAGRDQRPSRSVLYYGLDDRRRMEFILRNPKINKAQPSSSSNELSEKALADFSQIVDY CESSSCRRKKIIESFGEKVQPTLCQRSCDACKHPNLVSSRLEELRRVPNCRFNKISPVFQSSVKPAHLDTEFWNREDEAS ISAEDISDSDDGNEVVSNIAISKVPAKAGLDAKFKALERAENAYYQGKGQTKQQGGGLADKKSISQTLRDACRKRLLDAL GQAKLRLGNIPCDDEASATHLETECFKKYEKVGKTFYNSQIAATVRWLSSATSSQMHDRLHAVIDQTKDDGASGSPDIVP ESPPASPKIVGTKPGETSNYEADVKPQHICKLGKRGHSDVSTEGAAASTGNMELPSIPTGNMVLPAIPTFREFLSQKGRD RAKSYSNSQPSGIRRKSSGQVDKEETSKRMKS* |
CDS seq | >KXG31219 ATGAAAGGCGTACTTCAGATTAAGGGGGCATCAGGGCGTGAAAAGAAGGCTCCTAAGGAGCTCGAGAGTGTCTTGAACCA ATATTTCGGATATTCGGGATTTCGAGGAAAACAACTGGAAGCTATAGAAGCTGTTCTATCAGGAAGAGATTGCTTTTGTT TGATGCCAACTGGCGGTGGAAAGTCCATGTGCTATCAGGTTCCAGCTCTGGTGAAGACAGGCATTGTTCTTGTCATTTCA CCCTTGATAGCGCTGATGGAGAACCAGGTTGCCAGCTTGAAAAATAAAGGGATTCCAGCTGAATTTCTCTCATCAACACA GGCATCTCACACTAAACAAAGGATACATGAAGACCTTGATACTGGTAATCCTTCTTTAAAGTTGCTATATGTCACTCCTG AGCTTGTTGCAACATCAGGCTTTATGGCAAAGCTAAAGAAGCTCTACAACAGAGGTCTTCTTGGTCTTGTTGCTATTGAT GAGGCTCACTGTATTTCGACTTGGGGCCATGATTTCAGACCTAGCTATCGCAAGCTTTCATCATTGAGGAAGCAGTTCCC AGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTCCCGAAGGTCCAGAAAGATGTGATATCATCACTGTGCCTGCAAA ATCCAGTGATTCTTAGAGCTTCATTTAATCGACCCAATATATTCTATGAAGTTCGTTACAAGGATCTTCTTGATGATGTT TACTCTGATATATCAAATTTACTGAAGTCAAGCGGAAATGCTTGCTCAATTATATATTGTCTTGAACGGGCAGCTTGTGA TGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTCTGCTGCTTATCATGCTGGCCTAAATAGCAAAGTGCGAAGTT CTGTTCTCGATGACTGGCTTTCGTCGAGAACTCAAGTTGTTGTTGCAACTGTAGCCTTTGGAATGGGTATTGATAGACAA GATGTCCGTATTGTATGCCACTTCAACTTGCCTAAGTCAATGGAATCCTTCTATCAGGAGTCAGGTCGAGCTGGTCGTGA TCAACGACCTTCAAGAAGTGTTTTGTATTACGGATTAGATGACCGGAGGAGAATGGAATTCATTTTGAGAAACCCCAAAA TTAACAAAGCACAACCGTCTTCCTCTTCAAATGAGCTTTCTGAGAAGGCTCTAGCTGACTTCAGTCAGATTGTTGACTAC TGTGAAAGTTCTAGCTGCCGGCGAAAAAAGATCATTGAGAGCTTTGGAGAGAAAGTACAACCAACTTTATGCCAACGCTC ATGTGATGCTTGCAAGCACCCAAATTTAGTGTCGTCACGTCTGGAGGAACTCCGTCGTGTGCCCAACTGTCGCTTTAATA AGATCTCCCCAGTGTTTCAAAGCTCAGTTAAACCAGCACACTTGGACACAGAATTCTGGAATCGTGAAGATGAGGCAAGC ATATCGGCTGAAGACATCTCAGATTCTGATGATGGGAATGAGGTGGTGAGTAATATAGCCATTTCAAAGGTTCCAGCAAA AGCTGGTCTGGATGCAAAATTTAAAGCTCTGGAGCGTGCTGAAAATGCTTATTACCAAGGAAAAGGTCAGACCAAGCAGC AGGGTGGTGGCCTTGCTGACAAGAAAAGCATCTCTCAGACGCTAAGAGATGCATGCCGGAAAAGATTGTTGGATGCTCTT GGACAAGCAAAGCTGCGACTTGGGAATATTCCGTGCGACGACGAGGCTTCTGCTACACACCTTGAAACAGAGTGCTTCAA AAAATATGAGAAAGTGGGCAAGACGTTCTACAACTCACAGATAGCCGCCACAGTTCGGTGGCTGTCATCCGCAACATCCA GTCAGATGCACGACCGCCTCCATGCTGTTATCGACCAAACTAAAGATGATGGTGCATCAGGCTCCCCCGACATTGTTCCA GAGTCACCTCCAGCATCTCCTAAAATCGTCGGCACAAAGCCAGGAGAAACCAGTAACTATGAAGCTGACGTCAAACCACA GCATATTTGTAAGTTGGGGAAAAGGGGACATTCAGATGTGTCTACAGAGGGTGCTGCGGCATCGACTGGGAACATGGAGC TCCCCTCAATACCAACTGGGAACATGGTGCTCCCCGCGATACCAACGTTCAGAGAATTCTTGAGCCAAAAAGGAAGGGAT CGGGCAAAGAGCTATTCAAATTCCCAGCCATCTGGTATTCGTAGGAAGTCTAGTGGTCAGGTTGATAAGGAAGAAACCAG CAAGAGGATGAAATCATGA |
Sb_4:65454899-65454906:- does not have available information here.