
Microexon ID | At_4:16936676-16936683:+ |
Species | Arabidopsis thaliana | Coordinates | 4:16936676..16936683 |
Microexon Cluster ID | MEP18 |
Size | 8 |
Phase | 1 |
Pfam Domain Motif | DEAD |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,8,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CCTGCWCTRGCAAARMCAGGMATTGTKCTTGTTGTTTSTCCYTTRATAGCHYTRATGGARAAYCARGTTAYGRSMTTGAARGARAAAGGRRTTSCWGCTGAATWTCTC |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | CTTTGATG |
Microexon Amino Acid seq | ALM |
Microexon-tag DNA Seq | CCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTC |
Microexon-tag Amino Acid Seq | PALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYL |
Microexon-tag spanning region | 16936527-16936826 |
Microexon-tag prediction score | 0.9584 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT4G35740.1x |
Reference Transcript ID | AT4G35740.1 |
Gene ID | AT4G35740 |
Gene Name | RECQL3 |
Transcript ID | AT4G35740.1 |
Protein ID | AT4G35740.1 |
Gene ID | AT4G35740 |
Gene Name | RECQL3 |
Pfam domain motif | DEAD |
Motif E-value | 2e-19 |
Motif start | 41 |
Motif end | 207 |
Protein seq | >AT4G35740.1 MKKSPLPVQNVQSSDKNVAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVL VVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLI AIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLL DNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGI DKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDFEQIVTYCEGS GCRRKKILESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQYSEFWNRNEDGSNS NEEISDSDDATEAANSVTGPKLSKKLGLDEKLVLLEQAEEKYYERNKQVKKSEKNAISEALRDSSKQRLLDALTRVLQLL ACVEEIDSQKGSEFLENECYRKYSKAGKSFYYSQIASTVRWLGTASRDELMTRLSSVVSLAREQEPLEEPLLATEPVENI EEEDDGKTNTVESRVDEPTQELVVSPILSPIRLPQVPSFSEFVNRRKIKQNTLIDKSSEGFDDKKPAKIMKLQ* |
CDS seq | >AT4G35740.1 ATGAAGAAATCGCCGTTGCCGGTGCAGAATGTGCAGAGCTCCGATAAGAACGTTGCCGGAAAAGAAGCATTGGTGAAGCT TTTGAGATGGCATTTCGGTCATGCAGATTTCAGAGGGAAGCAATTGGAGGCTATTCAAGCTGTTGTATCTGGAAGGGATT GCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTT GTTGTGTCTCCTTTGATTGCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTCTC ATCTACCCAAGCTACACATGTTAAGAACAAGATCCATGAAGACCTTGATTCTGGAAAACCCTCAGTAAGATTGCTGTATG TTACTCCAGAATTGATTGCGACGAAAGGGTTTATGTTGAAGCTGAGAAAACTCCATTCCAGGGGTTTGCTAAATCTTATA GCTATAGACGAGGCGCATTGCATCTCATCATGGGGCCACGACTTCAGACCTAGTTATCGTCAACTTTCAACCTTGAGAGA TTCTTTGGCAGATGTTCCGGTGTTGGCTCTAACTGCTACTGCTGCTCCCAAAGTACAAAAGGATGTTATCGACTCCTTGA ATTTGCGGAATCCTTTGGTCCTCAAGTCTTCTTTCAATCGCCCAAATATCTTCTATGAAGTTCGTTACAAAGATCTTTTG GATAATGCTTATACTGATTTGGGCAACTTGCTCAAGTCATGTGGAAATATTTGTGCAATTATCTATTGCCTTGAGCGTAC AACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATTTCTTCTGCGGCCTATCATGCAGGACTCAATAGTAAAA TGAGGAGTACTGTTTTAGATGATTGGCTGTCCTCCAAGAAGCAAATTATTGTTGCCACAGTGGCTTTCGGAATGGGCATA GATAAGAAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAAGAGTCTGGTAGAGC AGGTCGGGATCAATTACCTTCAAGAAGTGTATTATACTATGGTGTAGATGACAGAAAGAAAATGGAATATCTTCTGCGGA ATTCGGAGAATAAGAAATCCTCATCCTCTAAGAAGCCTACATCTGACTTTGAACAGATTGTGACGTACTGCGAAGGTTCT GGATGCCGAAGAAAAAAGATTCTTGAGAGCTTTGGTGAAGAGTTTCCTGTGCAGCAATGCAAAAAAACGTGTGATGCATG TAAGCATCCTAATCAAGTTGCTCATTGCTTGGAGGAGCTTATGACCACTGCCTCCCGAAGACACAATTCTTCTCGAATTT TCATCACCAGCTCGAACAATAAGACCAATGAGGGACAGTACTCTGAGTTCTGGAATCGTAATGAAGATGGAAGCAATTCC AATGAGGAAATATCAGATTCAGATGATGCCACTGAGGCTGCCAATAGCGTAACAGGACCTAAACTATCGAAAAAGTTGGG ACTAGACGAGAAATTGGTTTTACTGGAGCAAGCTGAGGAAAAGTACTACGAAAGGAATAAACAGGTCAAAAAGTCAGAGA AGAATGCAATATCTGAAGCCCTAAGGGATTCGAGCAAGCAGAGACTCTTGGATGCGTTGACACGAGTACTTCAGCTGCTT GCCTGTGTGGAGGAGATTGATTCCCAGAAAGGATCCGAGTTTCTTGAAAATGAGTGCTATCGAAAATATAGCAAAGCAGG GAAATCGTTTTACTACTCGCAGATAGCGAGTACTGTGAGATGGCTAGGAACCGCAAGCAGAGATGAGCTAATGACCCGAC TTAGCTCAGTGGTCAGTTTGGCTAGAGAGCAAGAGCCATTAGAAGAGCCGTTGCTGGCTACTGAACCGGTGGAGAACATA GAGGAAGAAGATGATGGTAAGACTAACACGGTCGAGTCAAGGGTTGATGAACCGACACAAGAGCTAGTGGTGAGTCCGAT CCTTTCGCCTATAAGGCTTCCACAAGTTCCATCATTCTCAGAGTTTGTTAACCGGAGAAAAATAAAACAAAACACATTGA TAGATAAATCTTCTGAAGGTTTTGATGACAAGAAACCGGCAAAGATAATGAAGCTTCAATAA |
Microexon DNA seq | CTTTGATG |
Microexon Amino Acid seq | ALM |
Microexon-tag DNA Seq | CCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTC |
Microexon-tag Amino Acid seq | PALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYL |
Transcript ID | AT4G35740.1 |
Gene ID | At.21155 |
Gene Name | RECQL3 |
Pfam domain motif | DEAD |
Motif E-value | 2e-19 |
Motif start | 41 |
Motif end | 207 |
Protein seq | >AT4G35740.1 MKKSPLPVQNVQSSDKNVAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVL VVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLI AIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLL DNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGI DKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDFEQIVTYCEGS GCRRKKILESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQYSEFWNRNEDGSNS NEEISDSDDATEAANSVTGPKLSKKLGLDEKLVLLEQAEEKYYERNKQVKKSEKNAISEALRDSSKQRLLDALTRVLQLL ACVEEIDSQKGSEFLENECYRKYSKAGKSFYYSQIASTVRWLGTASRDELMTRLSSVVSLAREQEPLEEPLLATEPVENI EEEDDGKTNTVESRVDEPTQELVVSPILSPIRLPQVPSFSEFVNRRKIKQNTLIDKSSEGFDDKKPAKIMKLQ* |
CDS seq | >AT4G35740.1 ATGAAGAAATCGCCGTTGCCGGTGCAGAATGTGCAGAGCTCCGATAAGAACGTTGCCGGAAAAGAAGCATTGGTGAAGCT TTTGAGATGGCATTTCGGTCATGCAGATTTCAGAGGGAAGCAATTGGAGGCTATTCAAGCTGTTGTATCTGGAAGGGATT GCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTT GTTGTGTCTCCTTTGATTGCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTCTC ATCTACCCAAGCTACACATGTTAAGAACAAGATCCATGAAGACCTTGATTCTGGAAAACCCTCAGTAAGATTGCTGTATG TTACTCCAGAATTGATTGCGACGAAAGGGTTTATGTTGAAGCTGAGAAAACTCCATTCCAGGGGTTTGCTAAATCTTATA GCTATAGACGAGGCGCATTGCATCTCATCATGGGGCCACGACTTCAGACCTAGTTATCGTCAACTTTCAACCTTGAGAGA TTCTTTGGCAGATGTTCCGGTGTTGGCTCTAACTGCTACTGCTGCTCCCAAAGTACAAAAGGATGTTATCGACTCCTTGA ATTTGCGGAATCCTTTGGTCCTCAAGTCTTCTTTCAATCGCCCAAATATCTTCTATGAAGTTCGTTACAAAGATCTTTTG GATAATGCTTATACTGATTTGGGCAACTTGCTCAAGTCATGTGGAAATATTTGTGCAATTATCTATTGCCTTGAGCGTAC AACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATTTCTTCTGCGGCCTATCATGCAGGACTCAATAGTAAAA TGAGGAGTACTGTTTTAGATGATTGGCTGTCCTCCAAGAAGCAAATTATTGTTGCCACAGTGGCTTTCGGAATGGGCATA GATAAGAAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAAGAGTCTGGTAGAGC AGGTCGGGATCAATTACCTTCAAGAAGTGTATTATACTATGGTGTAGATGACAGAAAGAAAATGGAATATCTTCTGCGGA ATTCGGAGAATAAGAAATCCTCATCCTCTAAGAAGCCTACATCTGACTTTGAACAGATTGTGACGTACTGCGAAGGTTCT GGATGCCGAAGAAAAAAGATTCTTGAGAGCTTTGGTGAAGAGTTTCCTGTGCAGCAATGCAAAAAAACGTGTGATGCATG TAAGCATCCTAATCAAGTTGCTCATTGCTTGGAGGAGCTTATGACCACTGCCTCCCGAAGACACAATTCTTCTCGAATTT TCATCACCAGCTCGAACAATAAGACCAATGAGGGACAGTACTCTGAGTTCTGGAATCGTAATGAAGATGGAAGCAATTCC AATGAGGAAATATCAGATTCAGATGATGCCACTGAGGCTGCCAATAGCGTAACAGGACCTAAACTATCGAAAAAGTTGGG ACTAGACGAGAAATTGGTTTTACTGGAGCAAGCTGAGGAAAAGTACTACGAAAGGAATAAACAGGTCAAAAAGTCAGAGA AGAATGCAATATCTGAAGCCCTAAGGGATTCGAGCAAGCAGAGACTCTTGGATGCGTTGACACGAGTACTTCAGCTGCTT GCCTGTGTGGAGGAGATTGATTCCCAGAAAGGATCCGAGTTTCTTGAAAATGAGTGCTATCGAAAATATAGCAAAGCAGG GAAATCGTTTTACTACTCGCAGATAGCGAGTACTGTGAGATGGCTAGGAACCGCAAGCAGAGATGAGCTAATGACCCGAC TTAGCTCAGTGGTCAGTTTGGCTAGAGAGCAAGAGCCATTAGAAGAGCCGTTGCTGGCTACTGAACCGGTGGAGAACATA GAGGAAGAAGATGATGGTAAGACTAACACGGTCGAGTCAAGGGTTGATGAACCGACACAAGAGCTAGTGGTGAGTCCGAT CCTTTCGCCTATAAGGCTTCCACAAGTTCCATCATTCTCAGAGTTTGTTAACCGGAGAAAAATAAAACAAAACACATTGA TAGATAAATCTTCTGAAGGTTTTGATGACAAGAAACCGGCAAAGATAATGAAGCTTCAATAA |