
Microexon ID | Ta_4D:342790975-342790982:+ |
Species | Triticum Aestivum | Coordinates | 4D:342790975..342790982 |
Microexon Cluster ID | MEP17 |
Size | 8 |
Phase | 1 |
Pfam Domain Motif | IP_trans |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,8,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CTYRYSRTGCAAGAGGAAKCYTGGWATGCRTAYCCAARRWGCARAACAGTRATCAAGTGCCCRYAYTTYASCAAGTKYWCWYTRACCATTGAMACYRTYMAYARRSCY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TGATCAAG |
Microexon Amino Acid seq | VIK |
Microexon-tag DNA Seq | CTCGCTGTGCATGAGGACTCGTGGTCCGCGTATCCAAAGAGCAGAACAGTGATCAAGTGCCCGCTTTTTAGCAAGTGTTCACTGACGATTGACACTGTGATAAGACCT |
Microexon-tag Amino Acid Seq | LAVHEDSWSAYPKSRTVIKCPLFSKCSLTIDTVIRP |
Microexon-tag spanning region | 342790773-342791138 |
Microexon-tag prediction score | 0.941 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | TraesCS4D02G197500.1x |
Reference Transcript ID | TraesCS4D02G197500.1 |
Gene ID | TraesCS4D02G197500 |
Gene Name | NA |
Transcript ID | TraesCS4D02G197500.1 |
Protein ID | |
Gene ID | TraesCS4D02G197500 |
Gene Name | |
Pfam domain motif | IP_trans |
Motif E-value | 4.20E-86 |
Motif start | 3 |
Motif end | 247 |
Protein seq | >TraesCS4D02G197500.1 MVQIKEFRIIMPMSMEEYEIGLSYTIMKMEQQNTNGKEGVEVLQQVPFEDEKLGEGQFTSKVYHLQSKIPSWMKGFASAS SLAVHEDSWSAYPKSRTVIKCPLFSKCSLTIDTVIRPDNGCSENAHNLNSQQLAEREVEIVDIASVSRDYWSKVITAPKV DLTTFKSQRTDRGPLLNGWMDSCRPVMTIYKLVIMDAPIWGLGERLEDCLIAGERALFLACHRMCFAWIDEWYGMTMEQI REMERHTDLLLKKTLKKAAKPGSKHEGKRKSLKDEIAVVGSCT* |
CDS seq | >TraesCS4D02G197500.1 ATGGTTCAGATCAAGGAATTCCGAATCATCATGCCTATGTCGATGGAGGAGTATGAGATAGGGCTCAGCTACACCATCAT GAAGATGGAGCAGCAGAATACAAATGGCAAGGAGGGCGTGGAGGTGCTGCAGCAGGTCCCTTTTGAGGATGAGAAACTGG GCGAAGGCCAATTCACCTCGAAAGTTTATCATTTGCAGAGCAAAATTCCATCTTGGATGAAGGGCTTTGCATCCGCGAGT TCTCTCGCTGTGCATGAGGACTCGTGGTCCGCGTATCCAAAGAGCAGAACAGTGATCAAGTGCCCGCTTTTTAGCAAGTG TTCACTGACGATTGACACTGTGATAAGACCTGACAACGGCTGCTCTGAAAATGCGCACAATCTAAACAGCCAGCAGCTAG CTGAAAGAGAGGTGGAGATCGTCGACATCGCGTCAGTATCGCGGGACTACTGGAGCAAGGTGATCACTGCTCCAAAAGTC GACCTCACAACTTTCAAGTCCCAACGGACGGACCGAGGCCCTCTTCTGAATGGGTGGATGGATTCTTGCCGTCCCGTGAT GACCATATACAAGCTTGTGATCATGGATGCTCCCATCTGGGGCCTGGGCGAACGGCTCGAAGATTGCCTCATCGCGGGGG AGAGGGCGCTGTTTCTGGCGTGCCACCGGATGTGCTTCGCGTGGATAGACGAGTGGTACGGCATGACCATGGAGCAGATC CGGGAGATGGAGAGGCACACGGACCTACTCCTCAAGAAGACACTGAAAAAGGCTGCAAAACCTGGGAGCAAGCACGAGGG CAAGAGGAAGTCCCTCAAAGACGAAATCGCCGTCGTGGGGAGCTGCACATAG |
Ta_4D:342790975-342790982:+ does not have available information here.