
Microexon ID | Os_3:9905784-9905791:- |
Species | Oryza sativa | Coordinates | 3:9905784..9905791 |
Microexon Cluster ID | MEP17 |
Size | 8 |
Phase | 1 |
Pfam Domain Motif | IP_trans |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,8,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CTYRYSRTGCAAGAGGAAKCYTGGWATGCRTAYCCAARRWGCARAACAGTRATCAAGTGCCCRYAYTTYASCAAGTKYWCWYTRACCATTGAMACYRTYMAYARRSCY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TGATCAAG |
Microexon Amino Acid seq | VIK |
Microexon-tag DNA Seq | CTTACCGTGCATGAGGAATCATGGTGCGCATATCCAAACAGCAGGACAGTGATCAAGTGCCCGCTTTTTAGCAAGTGTTCACTGACCATCGACACTGTGATCAGACCT |
Microexon-tag Amino Acid Seq | LTVHEESWCAYPNSRTVIKCPLFSKCSLTIDTVIRP |
Microexon-tag spanning region | 9905633-9905974 |
Microexon-tag prediction score | 0.9523 |
Overlapped with the annotated transcript (%) | 86.96 |
New Transcript ID | Os03t0287100-01x |
Reference Transcript ID | Os03t0287100-01 |
Gene ID | Os03g0287100 |
Gene Name | NA |
Os_3:9905784-9905791:- does not have available information here.
Microexon DNA seq | TGATCAAG |
Microexon Amino Acid seq | VIK |
Microexon-tag DNA Seq | CTTACCGTGCATGAGGAATCATGGTGCGCATATCCAAACAGCAGGACAGTGATCAAGTGCCCGCTTTTTAGCAAGTGTTCACTGACCATCGACACTGTGATCAGACCT |
Microexon-tag Amino Acid seq | LTVHEESWCAYPNSRTVIKCPLFSKCSLTIDTVIRP |
Transcript ID | Os.18172.1 |
Gene ID | Os.18172 |
Gene Name | NA |
Pfam domain motif | IP_trans |
Motif E-value | 1.2e-101 |
Motif start | 3 |
Motif end | 248 |
Protein seq | >Os.18172.1 MVKIKEFRIVVPMSMEEYEIGISYTIMKMEQQNTNSKEGVEVLQQVPFEDEKLGKGQYTSKNYHLQSKIPSWMKGFAPAS ALTVHEESWCAYPNSRTVIKCPLFSKCSLTIDTVIRPDNGCSENAHNLTSEQLAAREVEVVDIALQSRDYWSKVISAPNV DLTAFRSQRTSRGPLLKGWMDSCRPVMTTYKLVIMDAPIWGLGERLEDCIIAGERALFLACHRLCFAWIDEWYGMTLDQI REMERQTDLLLKKTLKKPAKAGSKHDGKRKTLKEEIVAVGSCT* |
CDS seq | >Os.18172.1 ATGGTTAAGATCAAGGAATTCCGGATCGTCGTGCCTATGTCGATGGAAGAGTATGAAATAGGGATCAGCTACACCATCAT GAAGATGGAGCAGCAAAACACGAACAGCAAGGAGGGCGTCGAGGTGCTGCAACAGGTCCCATTTGAGGATGAGAAGCTTG GCAAGGGCCAATACACCTCGAAGAATTATCATTTGCAGAGCAAAATTCCATCTTGGATGAAAGGTTTTGCGCCAGCAAGT GCACTTACCGTGCATGAGGAATCATGGTGCGCATATCCAAACAGCAGGACAGTGATCAAGTGCCCGCTTTTTAGCAAGTG TTCACTGACCATCGACACTGTGATCAGACCTGACAATGGCTGCTCTGAGAACGCCCACAATTTAACCAGTGAACAATTAG CTGCAAGAGAGGTAGAGGTCGTCGACATCGCGTTGCAGTCGAGGGACTACTGGAGCAAGGTGATCAGCGCCCCAAACGTC GACCTGACAGCCTTCAGGTCGCAGAGGACGAGCCGAGGCCCTCTCTTGAAGGGTTGGATGGATTCATGCCGTCCCGTCAT GACCACGTACAAGCTGGTGATCATGGACGCTCCGATCTGGGGCTTGGGTGAACGCCTGGAAGACTGCATCATCGCGGGGG AGAGGGCGCTGTTCTTGGCGTGCCACCGGCTGTGCTTCGCGTGGATCGACGAGTGGTACGGCATGACGTTGGATCAGATC CGAGAGATGGAGCGTCAGACCGACCTGCTTCTCAAGAAGACGCTGAAGAAGCCTGCGAAGGCCGGGAGCAAGCACGATGG CAAGAGGAAGACGCTCAAAGAGGAGATTGTAGCTGTCGGGAGCTGCACGTAG |