Microexon ID Os_3:9905784-9905791:-
Species Oryza sativa
Coordinates 3:9905784..9905791
Microexon Cluster ID MEP17
Size 8
Phase 1
Pfam Domain Motif IP_trans
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,8,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq CTYRYSRTGCAAGAGGAAKCYTGGWATGCRTAYCCAARRWGCARAACAGTRATCAAGTGCCCRYAYTTYASCAAGTKYWCWYTRACCATTGAMACYRTYMAYARRSCY
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TGATCAAG
Microexon Amino Acid seq VIK
Microexon-tag DNA Seq CTTACCGTGCATGAGGAATCATGGTGCGCATATCCAAACAGCAGGACAGTGATCAAGTGCCCGCTTTTTAGCAAGTGTTCACTGACCATCGACACTGTGATCAGACCT
Microexon-tag Amino Acid Seq LTVHEESWCAYPNSRTVIKCPLFSKCSLTIDTVIRP
Microexon-tag spanning region9905633-9905974
Microexon-tag prediction score0.9523
Overlapped with the annotated transcript (%) 86.96
New Transcript ID Os03t0287100-01x
Reference Transcript ID Os03t0287100-01
Gene ID Os03g0287100
Gene Name NA
Os_3:9905784-9905791:- does not have available information here.
Microexon DNA seq TGATCAAG
Microexon Amino Acid seq VIK
Microexon-tag DNA Seq CTTACCGTGCATGAGGAATCATGGTGCGCATATCCAAACAGCAGGACAGTGATCAAGTGCCCGCTTTTTAGCAAGTGTTCACTGACCATCGACACTGTGATCAGACCT
Microexon-tag Amino Acid seq LTVHEESWCAYPNSRTVIKCPLFSKCSLTIDTVIRP
Transcript ID Os.18172.1
Gene ID Os.18172
Gene Name NA
Pfam domain motif IP_trans
Motif E-value 1.2e-101
Motif start 3
Motif end 248
Protein seq >Os.18172.1
MVKIKEFRIVVPMSMEEYEIGISYTIMKMEQQNTNSKEGVEVLQQVPFEDEKLGKGQYTSKNYHLQSKIPSWMKGFAPAS
ALTVHEESWCAYPNSRTVIKCPLFSKCSLTIDTVIRPDNGCSENAHNLTSEQLAAREVEVVDIALQSRDYWSKVISAPNV
DLTAFRSQRTSRGPLLKGWMDSCRPVMTTYKLVIMDAPIWGLGERLEDCIIAGERALFLACHRLCFAWIDEWYGMTLDQI
REMERQTDLLLKKTLKKPAKAGSKHDGKRKTLKEEIVAVGSCT*
CDS seq >Os.18172.1
ATGGTTAAGATCAAGGAATTCCGGATCGTCGTGCCTATGTCGATGGAAGAGTATGAAATAGGGATCAGCTACACCATCAT
GAAGATGGAGCAGCAAAACACGAACAGCAAGGAGGGCGTCGAGGTGCTGCAACAGGTCCCATTTGAGGATGAGAAGCTTG
GCAAGGGCCAATACACCTCGAAGAATTATCATTTGCAGAGCAAAATTCCATCTTGGATGAAAGGTTTTGCGCCAGCAAGT
GCACTTACCGTGCATGAGGAATCATGGTGCGCATATCCAAACAGCAGGACAGTGATCAAGTGCCCGCTTTTTAGCAAGTG
TTCACTGACCATCGACACTGTGATCAGACCTGACAATGGCTGCTCTGAGAACGCCCACAATTTAACCAGTGAACAATTAG
CTGCAAGAGAGGTAGAGGTCGTCGACATCGCGTTGCAGTCGAGGGACTACTGGAGCAAGGTGATCAGCGCCCCAAACGTC
GACCTGACAGCCTTCAGGTCGCAGAGGACGAGCCGAGGCCCTCTCTTGAAGGGTTGGATGGATTCATGCCGTCCCGTCAT
GACCACGTACAAGCTGGTGATCATGGACGCTCCGATCTGGGGCTTGGGTGAACGCCTGGAAGACTGCATCATCGCGGGGG
AGAGGGCGCTGTTCTTGGCGTGCCACCGGCTGTGCTTCGCGTGGATCGACGAGTGGTACGGCATGACGTTGGATCAGATC
CGAGAGATGGAGCGTCAGACCGACCTGCTTCTCAAGAAGACGCTGAAGAAGCCTGCGAAGGCCGGGAGCAAGCACGATGG
CAAGAGGAAGACGCTCAAAGAGGAGATTGTAGCTGTCGGGAGCTGCACGTAG