
Microexon ID | Pp_10:4721193-4721200:- |
Species | Physcomitrium patens | Coordinates | 10:4721193..4721200 |
Microexon Cluster ID | MEP16 |
Size | 8 |
Phase | 1 |
Pfam Domain Motif | SNF2_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,8,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | BTWWMHTGGCTYATACGAHKRTATSAGMWYGGYRTMAAYGKMATTCTYGSWGATGARATGGGWCTKGGRAARACWYTKCAARCYATHTCHTTSYTGRGYTAYYTRMAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTGATGAG |
Microexon Amino Acid seq | GDE |
Microexon-tag DNA Seq | GTGTCATGGCTCATTGGCCGTTACGTGCTTGGCGTCAATGTCATTCTGGGTGATGAGATGGGATTAGGGAAGACGCTGCAGTCCATTGTGTTGCTTGCGTACTTGAAA |
Microexon-tag Amino Acid Seq | VSWLIGRYVLGVNVILGDEMGLGKTLQSIVLLAYLK |
Microexon-tag spanning region | 4720842-4721593 |
Microexon-tag prediction score | 0.9131 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c10_6710V3.1x |
Reference Transcript ID | Pp3c10_6710V3.1 |
Gene ID | Pp3c10_6710 |
Gene Name | NA |
Transcript ID | Pp3c10_6710V3.1 |
Protein ID | Pp3c10_6710V3.1 |
Gene ID | Pp3c10_6710 |
Gene Name | NA |
Pfam domain motif | SNF2_N |
Motif E-value | 1.7e-46 |
Motif start | 60 |
Motif end | 351 |
Protein seq | >Pp3c10_6710V3.1 MEALKHIQEAVGVVTRFDGRGVCDAGDVLAQCKNWGITAELKPHQAEGVSWLIGRYVLGVNVILGDEMGLGKTLQSIVLL AYLKFARSCKGPFLVICPLSVTEGWALEMARFAPKLRVLRYVGNKGEREELRRSISEHVNKQAPSARTNPDLPFDVLLST YELAMADVSFLSRIRWSYAIIDEAQRLKNADSVLFKTLDEQYMLPRRLLLTGTPVQNNLSELWALLHFCMPLIFTNVEEF LDAFGPAAAATHKDGDKIVDKEDSILTILRETVKVFMLRRTKAALVHSKALVLPPLTEVTIFSPMANIQKQVYVSVLKKE SPKIIGDSPGTATSLQNIVIQLRKACSHPYLFDGIEPEPFQEGEHIVEASGKLKMLDVILKKLHASGHRVLIFAQMTRTL DILQDYLEYRSYSYERLDGSVRAEERFNAVHSFSAGHSKCGGDAKSGSAFVFLLTTRAGGVGLNLIGADTVIFYEQDWNP QADKQALQRAHRIGQISPVLAINLITRHTIDEVIMRRAKKKLELTCNVIGRDDADLETHGPASAVSTDLRSMIMFGINTL HSSDATQDTEVGRSSELERIVEAALNQRGKAGPGLSNATEFGNVELVTLDAQDDGAENFYNYEGKDFAKPADKALLESWA VHANASNGDEPSTRRTRKVKASYLSDDADKDNSRAQKRQKAEDKKHAKWKSLGYHTLAIDDPGAGLQPALSSDNVGSDVH FVIGDCTVPVTTRPDEPCIILSFVDDSGVWGSGGMFNAVAKLSFKIPEAYEAAHEAEDLHLGDFHLVPLPGDRRFVGVAV IQTYSRRRKVPRSDISISAFETCLRKVVTAAKARSASVHVPRIGSRGQGKNEWYAVERLLRKYATGYDVPFYVYYYRRP* |
CDS seq | >Pp3c10_6710V3.1 ATGGAGGCGTTGAAGCACATCCAAGAGGCTGTGGGAGTGGTGACGAGGTTTGATGGAAGAGGAGTGTGTGATGCTGGCGA CGTGTTGGCCCAGTGCAAGAATTGGGGTATTACTGCGGAGCTGAAGCCCCATCAAGCTGAGGGGGTGTCATGGCTCATTG GCCGTTACGTGCTTGGCGTCAATGTCATTCTGGGTGATGAGATGGGATTAGGGAAGACGCTGCAGTCCATTGTGTTGCTT GCGTACTTGAAATTCGCACGCTCTTGCAAAGGCCCATTTTTGGTGATATGCCCATTGAGCGTAACAGAAGGATGGGCTCT GGAGATGGCAAGATTTGCGCCAAAGTTGAGGGTATTGCGGTATGTTGGAAACAAAGGAGAGAGAGAAGAGTTACGCAGAA GTATCAGCGAGCACGTTAATAAGCAGGCCCCGTCTGCTCGGACAAATCCAGATTTGCCGTTTGATGTACTTCTATCGACT TATGAGCTTGCGATGGCTGATGTATCATTCTTAAGCCGTATACGCTGGAGTTATGCTATTATTGATGAAGCTCAACGCCT TAAAAATGCTGACAGTGTGCTTTTCAAAACCCTTGACGAGCAGTATATGTTACCCCGACGCTTGCTGCTCACCGGAACCC CAGTGCAAAACAACCTTTCAGAACTTTGGGCATTGCTACACTTTTGCATGCCTTTAATCTTTACCAATGTAGAAGAGTTT CTTGATGCTTTCGGGCCAGCTGCCGCTGCTACACATAAAGATGGAGACAAAATTGTTGATAAGGAAGACTCAATTCTGAC AATTCTACGGGAAACTGTCAAAGTTTTTATGCTGAGACGTACAAAAGCTGCTCTTGTTCACTCAAAGGCTCTTGTTCTTC CCCCTCTTACTGAAGTTACCATATTTTCTCCTATGGCTAATATTCAGAAGCAAGTGTACGTCTCAGTATTGAAGAAGGAA TCTCCAAAGATTATCGGTGACAGTCCTGGAACAGCAACGTCACTGCAGAATATTGTTATCCAGTTAAGAAAAGCTTGCAG CCATCCCTATCTCTTTGATGGGATCGAACCAGAACCATTTCAAGAGGGTGAGCACATTGTTGAGGCTAGTGGAAAGCTGA AGATGCTCGATGTGATCCTGAAAAAGCTGCATGCTAGTGGTCATCGTGTTCTTATTTTTGCTCAAATGACCCGCACGCTG GACATACTTCAGGACTACCTGGAGTATCGGAGCTATTCGTATGAACGCCTTGATGGTTCAGTTCGTGCAGAGGAGCGGTT TAACGCTGTTCACAGCTTTAGCGCAGGTCACTCGAAATGTGGTGGTGATGCCAAGTCTGGCAGCGCATTTGTGTTTCTGC TCACTACCCGTGCAGGAGGTGTTGGCTTGAACCTCATCGGTGCAGACACTGTTATCTTTTACGAGCAAGACTGGAACCCT CAAGCTGACAAGCAGGCGTTGCAACGAGCACATAGAATAGGGCAGATATCACCTGTATTGGCTATTAATCTTATTACACG TCACACAATTGACGAGGTGATAATGAGGAGGGCAAAAAAGAAACTAGAGCTCACTTGCAATGTGATTGGGCGGGACGATG CGGATTTGGAAACTCATGGTCCTGCAAGTGCCGTCTCGACAGACTTGAGATCCATGATAATGTTTGGGATTAATACGCTT CACTCGTCCGATGCTACCCAAGATACTGAGGTTGGTCGTAGCTCAGAGCTGGAAAGAATTGTGGAAGCTGCGTTGAACCA GCGTGGCAAAGCAGGCCCTGGCTTGTCAAATGCCACTGAATTCGGCAATGTCGAACTCGTTACATTAGATGCCCAAGACG ATGGCGCTGAAAACTTTTACAATTATGAAGGCAAGGACTTTGCGAAGCCGGCTGATAAAGCACTGCTGGAATCTTGGGCT GTGCATGCGAATGCAAGTAATGGAGATGAACCTAGCACTCGGCGAACACGCAAAGTAAAAGCTTCTTATTTGAGTGACGA TGCAGACAAGGACAACTCCAGGGCTCAGAAGAGGCAGAAAGCAGAAGATAAGAAACACGCAAAATGGAAATCACTTGGAT ATCATACATTAGCCATTGACGATCCTGGTGCAGGACTTCAGCCAGCTCTTTCAAGTGACAACGTGGGCAGCGATGTTCAT TTTGTGATTGGCGATTGCACAGTTCCTGTGACAACGCGCCCAGACGAACCCTGCATCATATTATCATTCGTCGATGACTC TGGAGTGTGGGGTAGTGGAGGAATGTTTAATGCTGTTGCAAAGCTTTCCTTCAAGATTCCAGAAGCTTATGAAGCAGCTC ATGAAGCTGAGGATTTGCACCTTGGTGATTTTCATCTAGTTCCTTTACCTGGAGATAGGAGATTTGTTGGAGTAGCAGTA ATTCAAACTTACAGCCGCAGAAGGAAGGTCCCTCGCAGTGACATCTCCATCTCAGCCTTCGAAACGTGCCTTCGCAAAGT TGTTACCGCCGCCAAGGCGCGCTCTGCGTCTGTGCACGTGCCAAGAATTGGGTCGCGGGGGCAAGGGAAGAACGAGTGGT ATGCGGTGGAGCGGCTGCTGCGAAAGTATGCGACGGGCTACGACGTGCCGTTCTATGTGTACTACTACAGAAGACCTTGA |
Microexon DNA seq | GTGATGAG |
Microexon Amino Acid seq | GDE |
Microexon-tag DNA Seq | GTGTCATGGCTCATTGGCCGTTACGTGCTTGGCGTCAATGTCATTCTGGGTGATGAGATGGGATTAGGGAAGACGCTGCAGTCCATTGTGTTGCTTGCGTACTTGAAA |
Microexon-tag Amino Acid seq | VSWLIGRYVLGVNVILGDEMGLGKTLQSIVLLAYLK |
Transcript ID | Pp3c10_6710V3.1 |
Gene ID | Pp.1878 |
Gene Name | NA |
Pfam domain motif | SNF2_N |
Motif E-value | 1.7e-46 |
Motif start | 60 |
Motif end | 351 |
Protein seq | >Pp3c10_6710V3.1 MEALKHIQEAVGVVTRFDGRGVCDAGDVLAQCKNWGITAELKPHQAEGVSWLIGRYVLGVNVILGDEMGLGKTLQSIVLL AYLKFARSCKGPFLVICPLSVTEGWALEMARFAPKLRVLRYVGNKGEREELRRSISEHVNKQAPSARTNPDLPFDVLLST YELAMADVSFLSRIRWSYAIIDEAQRLKNADSVLFKTLDEQYMLPRRLLLTGTPVQNNLSELWALLHFCMPLIFTNVEEF LDAFGPAAAATHKDGDKIVDKEDSILTILRETVKVFMLRRTKAALVHSKALVLPPLTEVTIFSPMANIQKQVYVSVLKKE SPKIIGDSPGTATSLQNIVIQLRKACSHPYLFDGIEPEPFQEGEHIVEASGKLKMLDVILKKLHASGHRVLIFAQMTRTL DILQDYLEYRSYSYERLDGSVRAEERFNAVHSFSAGHSKCGGDAKSGSAFVFLLTTRAGGVGLNLIGADTVIFYEQDWNP QADKQALQRAHRIGQISPVLAINLITRHTIDEVIMRRAKKKLELTCNVIGRDDADLETHGPASAVSTDLRSMIMFGINTL HSSDATQDTEVGRSSELERIVEAALNQRGKAGPGLSNATEFGNVELVTLDAQDDGAENFYNYEGKDFAKPADKALLESWA VHANASNGDEPSTRRTRKVKASYLSDDADKDNSRAQKRQKAEDKKHAKWKSLGYHTLAIDDPGAGLQPALSSDNVGSDVH FVIGDCTVPVTTRPDEPCIILSFVDDSGVWGSGGMFNAVAKLSFKIPEAYEAAHEAEDLHLGDFHLVPLPGDRRFVGVAV IQTYSRRRKVPRSDISISAFETCLRKVVTAAKARSASVHVPRIGSRGQGKNEWYAVERLLRKYATGYDVPFYVYYYRRP* |
CDS seq | >Pp3c10_6710V3.1 ATGGAGGCGTTGAAGCACATCCAAGAGGCTGTGGGAGTGGTGACGAGGTTTGATGGAAGAGGAGTGTGTGATGCTGGCGA CGTGTTGGCCCAGTGCAAGAATTGGGGTATTACTGCGGAGCTGAAGCCCCATCAAGCTGAGGGGGTGTCATGGCTCATTG GCCGTTACGTGCTTGGCGTCAATGTCATTCTGGGTGATGAGATGGGATTAGGGAAGACGCTGCAGTCCATTGTGTTGCTT GCGTACTTGAAATTCGCACGCTCTTGCAAAGGCCCATTTTTGGTGATATGCCCATTGAGCGTAACAGAAGGATGGGCTCT GGAGATGGCAAGATTTGCGCCAAAGTTGAGGGTATTGCGGTATGTTGGAAACAAAGGAGAGAGAGAAGAGTTACGCAGAA GTATCAGCGAGCACGTTAATAAGCAGGCCCCGTCTGCTCGGACAAATCCAGATTTGCCGTTTGATGTACTTCTATCGACT TATGAGCTTGCGATGGCTGATGTATCATTCTTAAGCCGTATACGCTGGAGTTATGCTATTATTGATGAAGCTCAACGCCT TAAAAATGCTGACAGTGTGCTTTTCAAAACCCTTGACGAGCAGTATATGTTACCCCGACGCTTGCTGCTCACCGGAACCC CAGTGCAAAACAACCTTTCAGAACTTTGGGCATTGCTACACTTTTGCATGCCTTTAATCTTTACCAATGTAGAAGAGTTT CTTGATGCTTTCGGGCCAGCTGCCGCTGCTACACATAAAGATGGAGACAAAATTGTTGATAAGGAAGACTCAATTCTGAC AATTCTACGGGAAACTGTCAAAGTTTTTATGCTGAGACGTACAAAAGCTGCTCTTGTTCACTCAAAGGCTCTTGTTCTTC CCCCTCTTACTGAAGTTACCATATTTTCTCCTATGGCTAATATTCAGAAGCAAGTGTACGTCTCAGTATTGAAGAAGGAA TCTCCAAAGATTATCGGTGACAGTCCTGGAACAGCAACGTCACTGCAGAATATTGTTATCCAGTTAAGAAAAGCTTGCAG CCATCCCTATCTCTTTGATGGGATCGAACCAGAACCATTTCAAGAGGGTGAGCACATTGTTGAGGCTAGTGGAAAGCTGA AGATGCTCGATGTGATCCTGAAAAAGCTGCATGCTAGTGGTCATCGTGTTCTTATTTTTGCTCAAATGACCCGCACGCTG GACATACTTCAGGACTACCTGGAGTATCGGAGCTATTCGTATGAACGCCTTGATGGTTCAGTTCGTGCAGAGGAGCGGTT TAACGCTGTTCACAGCTTTAGCGCAGGTCACTCGAAATGTGGTGGTGATGCCAAGTCTGGCAGCGCATTTGTGTTTCTGC TCACTACCCGTGCAGGAGGTGTTGGCTTGAACCTCATCGGTGCAGACACTGTTATCTTTTACGAGCAAGACTGGAACCCT CAAGCTGACAAGCAGGCGTTGCAACGAGCACATAGAATAGGGCAGATATCACCTGTATTGGCTATTAATCTTATTACACG TCACACAATTGACGAGGTGATAATGAGGAGGGCAAAAAAGAAACTAGAGCTCACTTGCAATGTGATTGGGCGGGACGATG CGGATTTGGAAACTCATGGTCCTGCAAGTGCCGTCTCGACAGACTTGAGATCCATGATAATGTTTGGGATTAATACGCTT CACTCGTCCGATGCTACCCAAGATACTGAGGTTGGTCGTAGCTCAGAGCTGGAAAGAATTGTGGAAGCTGCGTTGAACCA GCGTGGCAAAGCAGGCCCTGGCTTGTCAAATGCCACTGAATTCGGCAATGTCGAACTCGTTACATTAGATGCCCAAGACG ATGGCGCTGAAAACTTTTACAATTATGAAGGCAAGGACTTTGCGAAGCCGGCTGATAAAGCACTGCTGGAATCTTGGGCT GTGCATGCGAATGCAAGTAATGGAGATGAACCTAGCACTCGGCGAACACGCAAAGTAAAAGCTTCTTATTTGAGTGACGA TGCAGACAAGGACAACTCCAGGGCTCAGAAGAGGCAGAAAGCAGAAGATAAGAAACACGCAAAATGGAAATCACTTGGAT ATCATACATTAGCCATTGACGATCCTGGTGCAGGACTTCAGCCAGCTCTTTCAAGTGACAACGTGGGCAGCGATGTTCAT TTTGTGATTGGCGATTGCACAGTTCCTGTGACAACGCGCCCAGACGAACCCTGCATCATATTATCATTCGTCGATGACTC TGGAGTGTGGGGTAGTGGAGGAATGTTTAATGCTGTTGCAAAGCTTTCCTTCAAGATTCCAGAAGCTTATGAAGCAGCTC ATGAAGCTGAGGATTTGCACCTTGGTGATTTTCATCTAGTTCCTTTACCTGGAGATAGGAGATTTGTTGGAGTAGCAGTA ATTCAAACTTACAGCCGCAGAAGGAAGGTCCCTCGCAGTGACATCTCCATCTCAGCCTTCGAAACGTGCCTTCGCAAAGT TGTTACCGCCGCCAAGGCGCGCTCTGCGTCTGTGCACGTGCCAAGAATTGGGTCGCGGGGGCAAGGGAAGAACGAGTGGT ATGCGGTGGAGCGGCTGCTGCGAAAGTATGCGACGGGCTACGACGTGCCGTTCTATGTGTACTACTACAGAAGACCTTGA |