
Microexon ID | Zm_7:10853791-10853797:+ |
Species | Zea mays | Coordinates | 7:10853791..10853797 |
Microexon Cluster ID | MEP15 |
Size | 7 |
Phase | 2 |
Pfam Domain Motif | GBP |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,7,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATATCTMGRYTSTCATTTGCTGTTGARMTTGCTGAAGARTTYTATGGAAGAGTGAAGGGRCAAGATGTTGCWTTTGARCCWGCWAARCTYYTGTGGCTTATCCARMGT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | AGTCAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATATCGAGACTTTCATTTGCCGTCGAAATTGCTGAAGAATTCTATGGAAGAGTCAAGGGGCAAGATGTTGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGG |
Microexon-tag Amino Acid Seq | ISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQR |
Microexon-tag spanning region | 10853643-10853924 |
Microexon-tag prediction score | 0.9563 |
Overlapped with the annotated transcript (%) | 93.52 |
New Transcript ID | Zm00001d018964_T002x |
Reference Transcript ID | Zm00001d018964_T002 |
Gene ID | Zm00001d018964 |
Gene Name | NA |
Zm_7:10853791-10853797:+ does not have available information here.
Microexon DNA seq | AGTCAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATATCGAGACTTTCATTTGCCGTCGAAATTGCTGAAGAATTCTATGGAAGAGTCAAGGGGCAAGATGTTGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGG |
Microexon-tag Amino Acid seq | ISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQR |
Transcript ID | Zm.29659.1 |
Gene ID | Zm.29659 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 1.5e-38 |
Motif start | 42 |
Motif end | 282 |
Protein seq | >Zm.29659.1 MGCAPVVWAAVWLLAAAVAGFADPGGLERAFPIVKPDYGHTKLQLAKEGLEAIQRIRTPIAAVSVIGPYRSGKSFLLNQL LSLSCDNGFGVGHMRDTKTKGIWVWGSPVEVDIGGSKVSVLYLDTEGFESVGKSNVYDDRIFALATVLSSVLIYNLPETI READISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVQQMVDEALQRVPNNNGDTNIDELNQIRDSLAV MGDNSTAFSLPQPHLQRTKLCDMEDQELDPLYVKKRDQLKEVVASMIKPKIVQGRTLNGTEFVSFLGQIVDALNKGEIPS AGSLVEIFNKAILERCLKVYSEIMGRAGLPVSVDELREFHDLAKDEARRLFNKQHFGKHHAARSILKLDEEIKKVYRNLG QANEYQSSKLCEARFSECEDKMERLQVLKLPSMAKFDAGFLLCNRSFETDCVGPAKESYRHRMSKMLARSRALFIKEYNN KLFNWLAIFSLAMVVVGRFLVKFFLLEVAAWVMFAFLETYTRLFWSSESLYYNPAWHAIVSSWETVVYSPVLDLDRWAFP ICAVLLFLAFYWRCLGGRRGIARSLLPLYNGAYYRSSSRTRTD* |
CDS seq | >Zm.29659.1 ATGGGCTGTGCCCCGGTGGTGTGGGCCGCGGTGTGGTTGCTTGCTGCCGCGGTGGCAGGGTTCGCCGATCCCGGCGGCCT CGAGCGCGCGTTTCCAATAGTGAAGCCAGACTACGGGCACACGAAACTCCAACTCGCAAAAGAAGGTCTGGAAGCAATTC AGAGGATCAGAACTCCAATAGCTGCTGTTTCTGTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCAACCAACTT CTCTCCCTATCATGTGACAATGGTTTTGGAGTTGGACACATGCGGGATACAAAAACAAAAGGTATATGGGTATGGGGTTC CCCCGTTGAGGTGGATATCGGTGGCTCCAAGGTGTCTGTTCTATACCTGGACACCGAAGGATTTGAGAGTGTTGGAAAAT CAAATGTATATGATGATAGGATATTTGCTCTGGCAACTGTTTTAAGTTCTGTTCTGATCTACAATCTTCCTGAAACAATT CGTGAAGCCGATATATCGAGACTTTCATTTGCCGTCGAAATTGCTGAAGAATTCTATGGAAGAGTCAAGGGGCAAGATGT TGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGGGATTTTCTCCAAGGAAAATCGGTTCAGCAGATGGTTGATG AAGCTCTCCAACGGGTACCTAACAACAATGGAGACACAAATATTGACGAGCTCAACCAAATCAGAGACTCTTTGGCGGTT ATGGGAGATAACAGTACAGCTTTTAGCTTACCACAGCCTCATCTGCAAAGGACAAAGTTATGTGATATGGAGGACCAGGA ACTTGATCCGTTGTATGTAAAGAAGAGGGATCAGTTGAAAGAAGTCGTTGCATCCATGATAAAACCAAAAATTGTGCAGG GTAGAACTCTGAATGGAACAGAGTTTGTATCCTTCCTAGGGCAGATAGTTGATGCTTTGAATAAAGGTGAAATTCCATCA GCCGGGTCGCTGGTTGAAATTTTCAATAAGGCCATTCTTGAACGTTGCTTGAAGGTGTACAGTGAAATAATGGGCAGAGC AGGTCTACCAGTGTCAGTGGATGAACTTCGGGAGTTCCACGACCTGGCAAAAGATGAAGCTAGAAGGCTTTTCAACAAGC AGCATTTCGGTAAACATCATGCTGCTCGGTCCATCCTCAAGCTTGATGAAGAGATTAAAAAGGTGTACAGAAACTTGGGC CAAGCTAACGAGTATCAGTCATCAAAGCTGTGCGAAGCACGGTTCTCAGAGTGCGAAGATAAAATGGAACGACTCCAAGT CTTGAAGCTTCCGTCCATGGCGAAATTTGATGCCGGATTCCTTCTCTGCAATCGAAGTTTTGAAACGGACTGTGTGGGGC CAGCCAAGGAAAGCTATCGACACCGGATGTCAAAGATGCTGGCAAGGTCCCGTGCTCTTTTCATCAAGGAGTACAACAAC AAGCTCTTCAACTGGCTCGCCATATTCTCCCTGGCCATGGTTGTCGTTGGGCGCTTCTTGGTCAAGTTCTTCCTGCTCGA AGTTGCTGCGTGGGTGATGTTTGCCTTCCTAGAGACATACACGAGGCTGTTCTGGTCGTCGGAGTCCCTGTACTACAACC CCGCCTGGCACGCGATCGTCTCTTCTTGGGAAACCGTCGTCTACAGCCCCGTTCTTGATCTTGACAGATGGGCGTTCCCG ATCTGCGCTGTCCTGTTGTTTTTGGCGTTTTATTGGCGTTGCCTCGGTGGAAGGAGGGGAATTGCCCGGTCACTGCTACC TCTGTACAACGGGGCTTATTACAGAAGCTCCAGTCGCACAAGAACAGACTGA |