
Microexon ID | Zm_5:4374191-4374197:- |
Species | Zea mays | Coordinates | 5:4374191..4374197 |
Microexon Cluster ID | MEP15 |
Size | 7 |
Phase | 2 |
Pfam Domain Motif | GBP |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,7,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATATCTMGRYTSTCATTTGCTGTTGARMTTGCTGAAGARTTYTATGGAAGAGTGAAGGGRCAAGATGTTGCWTTTGARCCWGCWAARCTYYTGTGGCTTATCCARMGT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | AGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTTCTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGG |
Microexon-tag Amino Acid Seq | ISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQR |
Microexon-tag spanning region | 4374061-4374350 |
Microexon-tag prediction score | 0.9841 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d013075_T001x |
Reference Transcript ID | Zm00001d013075_T001 |
Gene ID | Zm00001d013075 |
Gene Name | NA |
Transcript ID | Zm00001d013075_T001 |
Protein ID | Zm00001d013075_P001 |
Gene ID | Zm00001d013075 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 2.8e-39 |
Motif start | 51 |
Motif end | 297 |
Protein seq | >Zm00001d013075_P001 MWRGRCAPGISVAALALLAVAAAAGAAAGDPDPDDLERAFPIVEPDHRHTKLRLSEQGLEAIRRIETPIAVVGVIGPYRS GKSFLLNQLLSLSCDKGFGVGHMRDTKTKGIWIWGTPVEMDVDGSKVSVLYLDTEGFESVGKSNVYDDRIFALATVLSSV LIYNLPETVREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVQQMVNEALQRVPNDNGDRYINEV NQIRDSLAVMGNHSTAFSLPQPHLQRTKLCDMEDKELEPLYVKRREQLKQLVSSIVKPKIVQGRTLNGKDFVSFLQQILE ALNKGEIPSTGSLVEIFNKAILDRCLKVYREKMDSLNLPVPVDELQKLHEMTNGEARILFDKQHFGKHHAAQSALKLEDE IKEVYRNFLLANEYQSSKLCEARFSECEDKMDHLQVLKLPSMAKFNAGFTHCNQSFVKDCVGPAKESYERRMSKMLAKSR ALFIKEYNNKLFNWLATFSLVMVVIGRFVIKFFLLEIVAWVMFIFLETYTRMFWSAESLYYNPAWHIIVSSWEMIVYSPI LDLDRWAIPIVIMLSLGVLYWRCFGRRRKRVKGSLLPLYKNSYKNSSRPRSD* |
CDS seq | >Zm00001d013075_T001 ATGTGGCGGGGGCGGTGTGCCCCGGGGATCAGCGTGGCGGCGCTGGCCCTGCTCGCCGTCGCGGCTGCTGCAGGAGCCGC CGCGGGGGATCCCGATCCCGACGACCTCGAGCGCGCGTTTCCAATAGTGGAGCCAGACCACAGACACACTAAACTTCGTC TCTCAGAGCAAGGTCTAGAAGCAATTCGAAGGATCGAAACTCCTATTGCTGTTGTTGGTGTCATTGGTCCCTATCGATCT GGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGGTTTTGGAGTTGGTCATATGCGAGATACTAA AACTAAAGGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACA CTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTC CTTATCTACAACCTTCCTGAGACGGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTT CTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCAAG GAAAATCTGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATGGTGACAGATATATTAATGAGGTC AATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAGCCACATCTTCAAAGAAC AAAATTATGTGATATGGAGGACAAAGAGCTTGAACCCTTATATGTAAAACGGCGGGAGCAACTAAAGCAGCTTGTTTCGT CCATTGTAAAACCAAAAATCGTGCAGGGTAGAACTCTAAATGGGAAGGACTTTGTGTCTTTCTTGCAGCAGATTCTTGAG GCTTTGAATAAAGGCGAAATTCCATCAACTGGATCTCTGGTTGAAATTTTTAACAAAGCCATTCTTGATCGCTGTCTGAA GGTGTACAGGGAGAAAATGGATAGCTTAAACCTACCAGTGCCGGTAGACGAACTGCAGAAACTTCATGAGATGACAAATG GTGAAGCTAGAATTCTCTTTGATAAGCAGCACTTTGGCAAACATCATGCTGCTCAGTCGGCCCTCAAGCTTGAAGATGAG ATTAAAGAGGTGTACAGAAACTTCCTTCTAGCTAATGAATATCAATCGTCAAAGCTATGTGAAGCTCGCTTTTCTGAGTG TGAAGATAAGATGGATCACCTTCAAGTCTTGAAACTTCCTTCAATGGCAAAATTCAATGCAGGCTTTACTCACTGCAACC AAAGTTTCGTAAAGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAGATGCTTGCCAAGTCTCGT GCTCTTTTCATCAAGGAGTACAATAACAAGCTTTTCAATTGGTTGGCGACATTCTCTTTGGTCATGGTGGTGATCGGGCG CTTTGTCATCAAGTTCTTCCTACTTGAAATTGTTGCTTGGGTGATGTTTATCTTCCTAGAGACGTACACGAGAATGTTCT GGTCAGCGGAATCACTGTATTATAATCCAGCTTGGCACATCATTGTTTCTTCCTGGGAGATGATCGTGTACAGCCCTATT CTTGATCTGGACAGATGGGCCATCCCAATTGTCATAATGCTATCATTGGGGGTTCTTTACTGGAGGTGCTTCGGCCGCAG AAGGAAGCGGGTAAAGGGTTCCCTCCTCCCATTGTACAAGAATTCTTACAAGAACTCGAGTCGCCCGAGATCAGATTAG |
Microexon DNA seq | AGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTTCTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGG |
Microexon-tag Amino Acid seq | ISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQR |
Transcript ID | Zm.21758.2 |
Gene ID | Zm.21758 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 1.1e-39 |
Motif start | 51 |
Motif end | 297 |
Protein seq | >Zm.21758.2 MWRGRCAPGISVAALALLAVAAAAGAAAGDPDPDDLERAFPIVEPDHRHTKLRLSEQGLEAIRRIETPIAVVGVIGPYRS GKSFLLNQLLSLSCDKGFGVGHMRDTKTKGIWIWGTPVEMDVDGSKVSVLYLDTEGFESVGKSNVYDDRIFALATVLSSV LIYNLPETVREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVQQMVNEALQRVPNDNGDRYINEV NQIRDSLAVMGNHSTAFSLPQPHLQRTKLCDMEDKELEPLYVKRREQLKQLVSSIVKPKIVQGRTLNGKDFVSFLQQILE ALNKGEIPSTGSLVEIFNKAILDRCLKVYREKMDSLNLPVPVDELQKLHEMTNGEARILFDKQHFGKHHAAQSALKLEDE IKEDVLCRCTETSF* |
CDS seq | >Zm.21758.2 ATGTGGCGGGGGCGGTGTGCCCCGGGGATCAGCGTGGCGGCGCTGGCCCTGCTCGCCGTCGCGGCTGCTGCAGGAGCCGC CGCGGGGGATCCCGATCCCGACGACCTCGAGCGCGCGTTTCCAATAGTGGAGCCAGACCACAGACACACTAAACTTCGTC TCTCAGAGCAAGGTCTAGAAGCAATTCGAAGGATCGAAACTCCTATTGCTGTTGTTGGTGTCATTGGTCCCTATCGATCT GGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGGTTTTGGAGTTGGTCATATGCGAGATACTAA AACTAAAGGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACA CTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTC CTTATCTACAACCTTCCTGAGACGGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTT CTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCCAAG GAAAATCTGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATGGTGACAGATATATTAATGAGGTC AATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAGCCACATCTTCAAAGAAC AAAATTATGTGATATGGAGGACAAAGAGCTTGAACCCTTATATGTAAAACGGCGGGAGCAACTAAAGCAGCTTGTTTCGT CCATTGTAAAACCAAAAATCGTGCAGGGTAGAACTCTAAATGGGAAGGACTTTGTGTCTTTCTTGCAGCAGATTCTTGAG GCTTTGAATAAAGGCGAAATTCCATCAACTGGATCTCTGGTTGAAATTTTTAACAAAGCCATTCTTGATCGCTGTCTGAA GGTGTACAGGGAGAAAATGGATAGCTTAAACCTACCAGTGCCGGTAGACGAACTGCAGAAACTTCATGAGATGACAAATG GTGAAGCTAGAATTCTCTTTGATAAGCAGCACTTTGGCAAACATCATGCTGCTCAGTCGGCCCTCAAGCTTGAAGATGAG ATTAAAGAGGATGTACTTTGTAGGTGTACAGAAACTTCCTTCTAG |