
Microexon ID | Sm_GL377582:2372686-2372692:- |
Species | Selaginella moellendorffii | Coordinates | GL377582:2372686..2372692 |
Microexon Cluster ID | MEP15 |
Size | 7 |
Phase | 2 |
Pfam Domain Motif | GBP |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,7,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATATCTMGRYTSTCATTTGCTGTTGARMTTGCTGAAGARTTYTATGGAAGAGTGAAGGGRCAAGATGTTGCWTTTGARCCWGCWAARCTYYTGTGGCTTATCCARMGT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATCTCCAAACTTTCTTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTTGGCTCATTCAGCGA |
Microexon-tag Amino Acid Seq | ISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQR |
Microexon-tag spanning region | 2372584-2372803 |
Microexon-tag prediction score | 0.8629 |
Overlapped with the annotated transcript (%) | NA |
New Transcript ID | NA |
Reference Transcript ID | NA |
Gene ID | NA |
Gene Name | NA |
Sm_GL377582:2372686-2372692:- does not have available information here.
Microexon DNA seq | TGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATCTCCAAACTTTCTTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTTGGCTCATTCAGCGA |
Microexon-tag Amino Acid seq | ISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQR |
Transcript ID | Sm.10939.1 |
Gene ID | Sm.10939 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 1.2e-34 |
Motif start | 60 |
Motif end | 269 |
Protein seq | >Sm.10939.1 MELIQMLSMQARGEGEQPMGLLLRLLSLWILLLGLARARPLEIFSHQAFPVVEPDPGHTKLAISKQGLELISSIKNPISV VAVIGPYRSGKSFLLNQLLSLTCNEGFGVGHLRDTQTRGIWLWGEPMELTIGNSVTSVLFMDTEGFESIGKSNVYDDRIF ALAALLSSVLIYNLPETVREADISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQRDFLEGKTVQEMVREALQPVVNP TGDKDIDQVNRIRESLSLMAQNSTAFGLPQAVMIASPSSHQTM* |
CDS seq | >Sm.10939.1 ATGGAGCTGATTCAAATGCTGTCAATGCAGGCCCGCGGCGAGGGCGAGCAGCCGATGGGATTGCTTCTGCGGCTTCTTTC ACTCTGGATCTTGCTTCTAGGTCTAGCCCGGGCGCGGCCTCTGGAGATCTTCTCGCATCAAGCCTTCCCCGTCGTGGAGC CAGATCCGGGTCACACAAAGCTCGCAATCTCAAAACAAGGACTGGAGCTCATCTCAAGCATAAAGAATCCAATTTCCGTG GTTGCGGTCATAGGTCCCTATCGATCGGGAAAATCATTTCTTCTAAACCAGCTTCTATCTCTCACTTGCAATGAAGGATT TGGAGTTGGACACTTGCGAGACACGCAGACTCGCGGCATCTGGCTATGGGGAGAACCCATGGAGTTGACAATTGGCAACT CGGTCACGTCTGTCCTCTTTATGGATACGGAGGGATTCGAAAGCATAGGAAAATCAAATGTCTACGATGACAGGATTTTC GCTCTAGCAGCATTACTTAGCTCAGTTCTTATTTACAACCTTCCGGAGACGGTCAGGGAAGCAGACATCTCCAAACTTTC TTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTT GGCTCATTCAGCGAGATTTCCTTGAGGGAAAAACTGTACAAGAAATGGTGAGGGAGGCTCTTCAACCGGTTGTTAATCCC ACCGGAGACAAAGACATTGATCAGGTCAATCGCATTAGAGAGTCTTTGAGTTTGATGGCACAAAACAGCACAGCATTTGG CTTACCGCAGGCTGTGATGATAGCCTCACCTTCATCGCACCAAACTATGTGA |