
Microexon ID | Sm_GL377568:3754710-3754716:- |
Species | Selaginella moellendorffii | Coordinates | GL377568:3754710..3754716 |
Microexon Cluster ID | MEP15 |
Size | 7 |
Phase | 2 |
Pfam Domain Motif | GBP |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,7,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATATCTMGRYTSTCATTTGCTGTTGARMTTGCTGAAGARTTYTATGGAAGAGTGAAGGGRCAAGATGTTGCWTTTGARCCWGCWAARCTYYTGTGGCTTATCCARMGT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATCTCCAAACTTTCTTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTTGGCTCATTCAGCGA |
Microexon-tag Amino Acid Seq | ISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQR |
Microexon-tag spanning region | 3754608-3754827 |
Microexon-tag prediction score | 0.8629 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | EFJ35720x |
Reference Transcript ID | EFJ35720 |
Gene ID | SELMODRAFT_438593 |
Gene Name | NA |
Transcript ID | EFJ35720 |
Protein ID | EFJ35720 |
Gene ID | SELMODRAFT_438593 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 1.2e-38 |
Motif start | 60 |
Motif end | 301 |
Protein seq | >EFJ35720 MELIQMLSMQARDEGEQPMGLLLRLLSLWILLLGLDRARPLEILSHQAFPVVEPDPGHTKLAISKQGLELISSIKNPISV VAVIGPYRSGKSFLLNQLLSLTCNEGFGVGHLRDTQTRGIWLWGEPMELTIGNSVTSVLFMDTEGFESIGKSNVYDDRIF ALAALLSSVLIYNLPETVREADISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQRDFLEGKTVQEMVREALQPVVNP TGDKDIDQVNRIRESLSLMAQNSTAFGLPQPHLHRTKLCEMDDSDLDPEYIKQRESLKELLRSMIRPKVVQGKTVTGKEF AAFLEQTLEALNEGEFPSAGSVVDSFNRVVIDRCMKAYNEDLSKLKLPMPEQSVEDFHQTTAAKVMLMFDKARFGRRRGD GALHLMESELSKAYALLKTDNDYASSKKCDRHYTLCENKIEEMQDLRLPSMAKFTAGLKECNQTFELSCMGPSKPSYRER LSKMMLRTKSHFVDNYNQKLFNWLVVFSLVMVVVGRFVVKFLLLEVAAWGLFVFLETYTRIFWSAELLYYNPVWQTIVAV WETTVYSPILDMDRWLIPLAWFALLAVIYWRFRRRKRAAALQSRLRHMV* |
CDS seq | >EFJ35720 ATGGAGCTGATTCAAATGCTGTCAATGCAGGCCCGCGACGAGGGCGAGCAGCCGATGGGATTGCTTCTGCGGCTTCTTTC ACTCTGGATCTTGCTTCTAGGTCTAGACCGGGCGCGGCCTCTGGAGATCCTCTCGCATCAAGCCTTCCCCGTCGTGGAGC CAGATCCGGGTCACACAAAGCTCGCAATCTCGAAACAAGGACTGGAGCTCATCTCAAGCATAAAGAATCCAATTTCCGTG GTTGCGGTCATAGGTCCCTATCGATCGGGAAAATCATTTCTTCTAAACCAGCTTCTATCTCTCACTTGCAATGAAGGATT TGGAGTTGGACACTTGCGAGACACGCAGACTCGCGGCATCTGGCTATGGGGAGAACCCATGGAGTTGACAATTGGCAACT CGGTCACGTCTGTCCTCTTTATGGATACGGAGGGATTCGAAAGCATAGGAAAATCAAATGTCTACGATGACAGGATTTTC GCTCTAGCAGCATTACTTAGCTCAGTTCTTATTTACAACCTTCCGGAGACGGTCAGGGAAGCAGACATCTCCAAACTTTC TTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTT GGCTCATTCAGCGAGATTTCCTTGAGGGAAAAACTGTACAAGAAATGGTGAGGGAGGCTCTTCAACCGGTTGTTAATCCC ACCGGAGACAAAGACATTGATCAGGTCAATCGCATTAGAGAGTCTTTGAGTTTGATGGCACAAAACAGCACAGCATTTGG CTTACCGCAGCCTCACCTTCATCGCACCAAACTATGTGAGATGGACGACTCCGATCTTGATCCAGAATACATCAAACAGC GTGAGAGCCTAAAGGAACTCTTGCGTTCCATGATACGGCCTAAGGTGGTGCAAGGGAAAACAGTAACTGGCAAGGAGTTT GCAGCTTTTCTCGAGCAGACGCTGGAAGCTTTGAACGAAGGAGAATTTCCTTCTGCAGGCTCTGTTGTTGACTCGTTCAA TCGAGTGGTCATCGACCGATGCATGAAAGCTTACAACGAGGATCTTTCAAAGCTCAAGTTGCCGATGCCGGAACAGTCGG TTGAAGATTTTCATCAAACGACAGCTGCCAAAGTTATGTTGATGTTCGATAAGGCGCGATTTGGTAGGCGCCGCGGCGAC GGAGCCCTCCATCTGATGGAAAGTGAACTAAGTAAGGCTTATGCTCTATTAAAAACCGATAACGACTACGCATCCTCGAA GAAATGTGACCGGCACTACACTCTATGCGAAAACAAGATTGAAGAGATGCAAGACTTGCGGCTGCCTTCAATGGCAAAGT TCACAGCCGGCTTGAAAGAGTGTAACCAGACGTTCGAGCTTAGCTGTATGGGTCCTTCCAAACCATCCTATCGCGAGAGG CTGTCAAAGATGATGCTAAGGACGAAATCTCACTTCGTCGACAACTATAACCAGAAGCTCTTCAACTGGCTCGTGGTTTT CTCGCTCGTCATGGTGGTCGTTGGCCGCTTCGTCGTGAAGTTCTTACTGCTCGAAGTGGCCGCATGGGGACTGTTCGTGT TCTTGGAGACTTACACGAGGATTTTCTGGTCGGCGGAGCTGCTGTATTACAATCCAGTGTGGCAAACGATTGTGGCAGTC TGGGAGACGACAGTTTATAGCCCAATCTTAGACATGGACAGGTGGTTGATACCTCTAGCTTGGTTCGCGCTTTTAGCAGT GATCTATTGGCGATTTCGGAGGAGAAAGAGAGCTGCCGCTTTGCAGTCACGATTGCGTCACATGGTATGA |
Microexon DNA seq | TGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATCTCCAAACTTTCTTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTTGGCTCATTCAGCGA |
Microexon-tag Amino Acid seq | ISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQR |
Transcript ID | EFJ35720 |
Gene ID | Sm.3446 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 1.2e-38 |
Motif start | 60 |
Motif end | 301 |
Protein seq | >EFJ35720 MELIQMLSMQARDEGEQPMGLLLRLLSLWILLLGLDRARPLEILSHQAFPVVEPDPGHTKLAISKQGLELISSIKNPISV VAVIGPYRSGKSFLLNQLLSLTCNEGFGVGHLRDTQTRGIWLWGEPMELTIGNSVTSVLFMDTEGFESIGKSNVYDDRIF ALAALLSSVLIYNLPETVREADISKLSFAVELGEEFYGRVKGHAASFEPSKLLWLIQRDFLEGKTVQEMVREALQPVVNP TGDKDIDQVNRIRESLSLMAQNSTAFGLPQPHLHRTKLCEMDDSDLDPEYIKQRESLKELLRSMIRPKVVQGKTVTGKEF AAFLEQTLEALNEGEFPSAGSVVDSFNRVVIDRCMKAYNEDLSKLKLPMPEQSVEDFHQTTAAKVMLMFDKARFGRRRGD GALHLMESELSKAYALLKTDNDYASSKKCDRHYTLCENKIEEMQDLRLPSMAKFTAGLKECNQTFELSCMGPSKPSYRER LSKMMLRTKSHFVDNYNQKLFNWLVVFSLVMVVVGRFVVKFLLLEVAAWGLFVFLETYTRIFWSAELLYYNPVWQTIVAV WETTVYSPILDMDRWLIPLAWFALLAVIYWRFRRRKRAAALQSRLRHMV* |
CDS seq | >EFJ35720 ATGGAGCTGATTCAAATGCTGTCAATGCAGGCCCGCGACGAGGGCGAGCAGCCGATGGGATTGCTTCTGCGGCTTCTTTC ACTCTGGATCTTGCTTCTAGGTCTAGACCGGGCGCGGCCTCTGGAGATCCTCTCGCATCAAGCCTTCCCCGTCGTGGAGC CAGATCCGGGTCACACAAAGCTCGCAATCTCGAAACAAGGACTGGAGCTCATCTCAAGCATAAAGAATCCAATTTCCGTG GTTGCGGTCATAGGTCCCTATCGATCGGGAAAATCATTTCTTCTAAACCAGCTTCTATCTCTCACTTGCAATGAAGGATT TGGAGTTGGACACTTGCGAGACACGCAGACTCGCGGCATCTGGCTATGGGGAGAACCCATGGAGTTGACAATTGGCAACT CGGTCACGTCTGTCCTCTTTATGGATACGGAGGGATTCGAAAGCATAGGAAAATCAAATGTCTACGATGACAGGATTTTC GCTCTAGCAGCATTACTTAGCTCAGTTCTTATTTACAACCTTCCGGAGACGGTCAGGGAAGCAGACATCTCCAAACTTTC TTTTGCAGTGGAATTGGGCGAGGAGTTTTATGGCCGTGTGAAGGGACATGCAGCCTCGTTCGAACCGTCAAAACTTCTTT GGCTCATTCAGCGAGATTTCCTTGAGGGAAAAACTGTACAAGAAATGGTGAGGGAGGCTCTTCAACCGGTTGTTAATCCC ACCGGAGACAAAGACATTGATCAGGTCAATCGCATTAGAGAGTCTTTGAGTTTGATGGCACAAAACAGCACAGCATTTGG CTTACCGCAGCCTCACCTTCATCGCACCAAACTATGTGAGATGGACGACTCCGATCTTGATCCAGAATACATCAAACAGC GTGAGAGCCTAAAGGAACTCTTGCGTTCCATGATACGGCCTAAGGTGGTGCAAGGGAAAACAGTAACTGGCAAGGAGTTT GCAGCTTTTCTCGAGCAGACGCTGGAAGCTTTGAACGAAGGAGAATTTCCTTCTGCAGGCTCTGTTGTTGACTCGTTCAA TCGAGTGGTCATCGACCGATGCATGAAAGCTTACAACGAGGATCTTTCAAAGCTCAAGTTGCCGATGCCGGAACAGTCGG TTGAAGATTTTCATCAAACGACAGCTGCCAAAGTTATGTTGATGTTCGATAAGGCGCGATTTGGTAGGCGCCGCGGCGAC GGAGCCCTCCATCTGATGGAAAGTGAACTAAGTAAGGCTTATGCTCTATTAAAAACCGATAACGACTACGCATCCTCGAA GAAATGTGACCGGCACTACACTCTATGCGAAAACAAGATTGAAGAGATGCAAGACTTGCGGCTGCCTTCAATGGCAAAGT TCACAGCCGGCTTGAAAGAGTGTAACCAGACGTTCGAGCTTAGCTGTATGGGTCCTTCCAAACCATCCTATCGCGAGAGG CTGTCAAAGATGATGCTAAGGACGAAATCTCACTTCGTCGACAACTATAACCAGAAGCTCTTCAACTGGCTCGTGGTTTT CTCGCTCGTCATGGTGGTCGTTGGCCGCTTCGTCGTGAAGTTCTTACTGCTCGAAGTGGCCGCATGGGGACTGTTCGTGT TCTTGGAGACTTACACGAGGATTTTCTGGTCGGCGGAGCTGCTGTATTACAATCCAGTGTGGCAAACGATTGTGGCAGTC TGGGAGACGACAGTTTATAGCCCAATCTTAGACATGGACAGGTGGTTGATACCTCTAGCTTGGTTCGCGCTTTTAGCAGT GATCTATTGGCGATTTCGGAGGAGAAAGAGAGCTGCCGCTTTGCAGTCACGATTGCGTCACATGGTATGA |