
Microexon ID | Os_3:33183404-33183410:+ |
Species | Oryza sativa | Coordinates | 3:33183404..33183410 |
Microexon Cluster ID | MEP15 |
Size | 7 |
Phase | 2 |
Pfam Domain Motif | GBP |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,7,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATATCTMGRYTSTCATTTGCTGTTGARMTTGCTGAAGARTTYTATGGAAGAGTGAAGGGRCAAGATGTTGCWTTTGARCCWGCWAARCTYYTGTGGCTTATCCARMGT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | AGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGG |
Microexon-tag Amino Acid Seq | ISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQR |
Microexon-tag spanning region | 33183260-33183551 |
Microexon-tag prediction score | 0.9844 |
Overlapped with the annotated transcript (%) | NA |
New Transcript ID | NA |
Reference Transcript ID | NA |
Gene ID | NA |
Gene Name | NA |
Os_3:33183404-33183410:+ does not have available information here.
Microexon DNA seq | AGTGAAG |
Microexon Amino Acid seq | RVK |
Microexon-tag DNA Seq | ATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGG |
Microexon-tag Amino Acid seq | ISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQR |
Transcript ID | Os.20757.1 |
Gene ID | Os.20757 |
Gene Name | NA |
Pfam domain motif | GBP |
Motif E-value | 2e-22 |
Motif start | 4 |
Motif end | 189 |
Protein seq | >Os.20757.1 MRDTKTKGIWIWGTPVEMDIDGSKVSVLYLDTEGFESVGKSNVYDDRIFALATVLSSVLIYNLPETVREADISRLSFAVE IAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVQQMVNEALQRVPNESGDKYIDEVNQIRDSLAVMGNNSTAFSLPQP HLQRTKLCDMDDRELDPLYVKRRDELKQVVASITRPKIVQGKTLNGKEFVSFLQQILEALNKGEIPSTGSLVEIFNKAIL DRCLKVYRDKMDGLRLPVPVDRLQQVHETAIDQARMLFDKQHFGKHHAAQSILKLDDEIKKVYRNFLLANEYQSSKLCEA RFSECEDKMDHLQVLKLPSMAKFNAGFFHCNRSFVRECVGPAKESYERRMSKMLVKSRALFIKEYNNKLFNWLVTFSLVM VVIGRFVIKFFLLEIVAWVMFIFLETYTRMFWSAESLYYNPAWHIIVSSWETIVYSPILDLDRWAIPIAVLLSFWLLYWR CFGRRKRGSRSSLLPLHNKISHKNSTRPRSD* |
CDS seq | >Os.20757.1 ATGCGAGATACTAAAACTAAAGGTATATGGATTTGGGGTACACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGT CCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGGATATTTGCTTTGGCAACTG TCTTGAGTTCAGTGCTAATCTACAACCTTCCTGAGACGGTGCGTGAAGCTGATATATCTAGGCTCTCATTTGCTGTTGAG ATTGCAGAAGAATTCTATGGAAGAGTGAAGGGGCAAGATGTTGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAG GGATTTCCTGCAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAACGAAAGTGGGGACAAAT ATATTGATGAGGTTAATCAAATTAGAGATTCTTTGGCAGTTATGGGCAACAACAGCACTGCTTTTAGCCTGCCCCAGCCG CATCTACAAAGAACAAAGTTATGTGACATGGATGACAGAGAGCTTGACCCCTTATATGTAAAAAGGCGGGATGAATTGAA GCAGGTCGTTGCGTCCATCACAAGACCAAAAATTGTGCAGGGGAAAACTCTAAATGGAAAGGAATTTGTTTCTTTCTTGC AGCAGATTCTCGAGGCATTAAATAAAGGAGAGATTCCATCAACGGGATCTCTTGTTGAAATTTTCAATAAGGCCATTCTT GATCGCTGTCTGAAGGTGTATAGGGATAAAATGGATGGCTTACGTCTACCAGTACCAGTAGACCGACTGCAACAAGTTCA TGAGACAGCAATTGATCAAGCTAGAATGCTGTTTGATAAGCAGCACTTTGGTAAACACCATGCTGCTCAGTCAATCCTTA AGCTTGATGATGAGATAAAAAAGGTGTACAGAAACTTCCTTCTAGCAAATGAGTATCAATCATCAAAGCTGTGTGAAGCA CGCTTCTCAGAATGTGAAGATAAAATGGACCACCTTCAAGTCTTGAAGCTCCCTTCCATGGCAAAGTTCAATGCAGGGTT TTTTCACTGCAATCGAAGTTTTGTAAGGGAATGTGTGGGCCCTGCAAAGGAAAGCTACGAGCGCAGAATGTCAAAGATGC TTGTCAAGTCTCGTGCTCTTTTTATCAAGGAGTACAATAACAAGCTCTTCAATTGGTTGGTAACCTTCTCCCTAGTCATG GTGGTTATTGGGCGCTTTGTCATCAAGTTCTTTTTACTTGAGATTGTTGCCTGGGTGATGTTCATCTTCCTGGAGACGTA CACGAGGATGTTCTGGTCAGCAGAGTCATTGTACTATAATCCAGCTTGGCACATCATTGTCTCTTCGTGGGAAACTATCG TATATAGCCCCATTCTCGATCTGGACAGATGGGCGATCCCCATTGCCGTATTATTGTCTTTTTGGCTTCTTTACTGGCGA TGTTTCGGTAGAAGAAAACGGGGCAGCCGATCGTCACTCCTGCCACTCCACAACAAGATCTCCCACAAGAACTCAACGCG CCCGAGATCAGACTAA |