
Microexon ID | Sl_7:56213952-56213958:+ |
Species | Solanum Lycopersicum | Coordinates | 7:56213952..56213958 |
Microexon Cluster ID | MEP14 |
Size | 7 |
Phase | 1 |
Pfam Domain Motif | Prefoldin_2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 52,7,49 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTGGAGGARCTGMRVCARYTRYCTGATGAYACAAAYACWTACAARTCYATWGGRARAAYGTTTRTTTTRGAGCCMAARTCAGTTYTRRTGRATGARCARGARMARAAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAAGAAC |
Microexon Amino Acid seq | GRT |
Microexon-tag DNA Seq | TTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGAAGAACATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAA |
Microexon-tag Amino Acid Seq | MEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQK |
Microexon-tag spanning region | 56211501-56214150 |
Microexon-tag prediction score | 0.9649 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Solyc07g042620.3.1x |
Reference Transcript ID | Solyc07g042620.3.1 |
Gene ID | Solyc07g042620.3 |
Gene Name | NA |
Transcript ID | Solyc07g042620.3.1 |
Protein ID | |
Gene ID | Solyc07g042620.3 |
Gene Name | |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 7.60E-20 |
Motif start | 13 |
Motif end | 115 |
Protein seq | >Solyc07g042620.3.1 MADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQK LKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA* |
CDS seq | >Solyc07g042620.3.1 ATGGCGGACGAAGCAAATAGAACTGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGT TCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATG ACACTAATACATACAAAGCCATAGGAAGAACATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAA CTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAA TAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAG |
Sl_7:56213952-56213958:+ does not have available information here.