
Microexon ID | Pp_19:2370582-2370588:+ |
Species | Physcomitrium patens | Coordinates | 19:2370582..2370588 |
Microexon Cluster ID | MEP14 |
Size | 7 |
Phase | 1 |
Pfam Domain Motif | Prefoldin_2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 52,7,49 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTGGAGGARCTGMRVCARYTRYCTGATGAYACAAAYACWTACAARTCYATWGGRARAAYGTTTRTTTTRGAGCCMAARTCAGTTYTRRTGRATGARCARGARMARAAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAAAAGC |
Microexon Amino Acid seq | GKA |
Microexon-tag DNA Seq | CTGGAAGAGTTGGGGAGCCTGCCCGAAGGAACTAACACGTACCGAACTCTTGGAAAAGCGTTTGTGCTGGAGCCAAAAGATGAGCTTATTAAAGAGCAGCAGACTAAA |
Microexon-tag Amino Acid Seq | MEELGSLPEGTNTYRTLGKAFVLEPKDELIKEQQTK |
Microexon-tag spanning region | 2370176-2371034 |
Microexon-tag prediction score | 0.8541 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c19_4350V3.1x |
Reference Transcript ID | Pp3c19_4350V3.1 |
Gene ID | Pp3c19_4350 |
Gene Name | NA |
Transcript ID | Pp3c19_4350V3.1 |
Protein ID | Pp3c19_4350V3.1 |
Gene ID | Pp3c19_4350 |
Gene Name | NA |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 1.8e-19 |
Motif start | 36 |
Motif end | 138 |
Protein seq | >Pp3c19_4350V3.1 MSRIPSFNSKLSGVILSFAFSFVMAAEINKEAFVELQGRLVETTSKLKHVQAQIRSKEAEKKRAFLTLEELGSLPEGTNT YRTLGKAFVLEPKDELIKEQQTKAEESDSAIATLVGSKEYLERQMKEVESNFRELLQNSPELARQVMAMSVS* |
CDS seq | >Pp3c19_4350V3.1 ATGTCAAGAATTCCTAGTTTCAATTCCAAGCTCTCTGGCGTGATCCTCAGTTTTGCATTCAGCTTCGTCATGGCCGCCGA GATCAACAAGGAGGCTTTTGTGGAGCTTCAAGGAAGGCTGGTGGAGACTACCTCGAAACTAAAACATGTCCAAGCACAAA TTCGGAGCAAGGAGGCTGAGAAGAAGCGCGCGTTTCTGACACTGGAAGAGTTGGGGAGCCTGCCCGAAGGAACTAACACG TACCGAACTCTTGGAAAAGCGTTTGTGCTGGAGCCAAAAGATGAGCTTATTAAAGAGCAGCAGACTAAAGCTGAGGAGAG TGACAGTGCGATTGCCACACTAGTGGGTTCGAAGGAGTACTTGGAGAGACAAATGAAGGAAGTTGAGAGCAACTTCAGAG AGTTGTTACAAAACTCTCCCGAACTTGCACGTCAAGTGATGGCAATGTCTGTGTCATGA |
Microexon DNA seq | GAAAAGC |
Microexon Amino Acid seq | GKA |
Microexon-tag DNA Seq | CTGGAAGAGTTGGGGAGCCTGCCCGAAGGAACTAACACGTACCGAACTCTTGGAAAAGCGTTTGTGCTGGAGCCAAAAGATGAGCTTATTAAAGAGCAGCAGACTAAA |
Microexon-tag Amino Acid seq | MEELGSLPEGTNTYRTLGKAFVLEPKDELIKEQQTK |
Transcript ID | Pp3c19_4350V3.1 |
Gene ID | Pp.10102 |
Gene Name | NA |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 1.9e-19 |
Motif start | 36 |
Motif end | 138 |
Protein seq | >Pp3c19_4350V3.1 MSRIPSFNSKLSGVILSFAFSFVMAAEINKEAFVELQGRLVETTSKLKHVQAQIRSKEAEKKRAFLTLEELGSLPEGTNT YRTLGKAFVLEPKDELIKEQQTKAEESDSAIATLVGSKEYLERQMKEVESNFRELLQNSPELARQVMAMSVS* |
CDS seq | >Pp3c19_4350V3.1 ATGTCAAGAATTCCTAGTTTCAATTCCAAGCTCTCTGGCGTGATCCTCAGTTTTGCATTCAGCTTCGTCATGGCCGCCGA GATCAACAAGGAGGCTTTTGTGGAGCTTCAAGGAAGGCTGGTGGAGACTACCTCGAAACTAAAACATGTCCAAGCACAAA TTCGGAGCAAGGAGGCTGAGAAGAAGCGCGCGTTTCTGACACTGGAAGAGTTGGGGAGCCTGCCCGAAGGAACTAACACG TACCGAACTCTTGGAAAAGCGTTTGTGCTGGAGCCAAAAGATGAGCTTATTAAAGAGCAGCAGACTAAAGCTGAGGAGAG TGACAGTGCGATTGCCACACTAGTGGGTTCGAAGGAGTACTTGGAGAGACAAATGAAGGAAGTTGAGAGCAACTTCAGAG AGTTGTTACAAAACTCTCCCGAACTTGCACGTCAAGTGATGGCAATGTCTGTGTCATGA |