
Microexon ID | Ha_10:209691179-209691185:- |
Species | Helianthus annuus | Coordinates | 10:209691179..209691185 |
Microexon Cluster ID | MEP14 |
Size | 7 |
Phase | 1 |
Pfam Domain Motif | Prefoldin_2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 52,7,49 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTGGAGGARCTGMRVCARYTRYCTGATGAYACAAAYACWTACAARTCYATWGGRARAAYGTTTRTTTTRGAGCCMAARTCAGTTYTRRTGRATGARCARGARMARAAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGAGAAC |
Microexon Amino Acid seq | GRT |
Microexon-tag DNA Seq | TTGGAGGAACTACGACAGCTGTCTGATGACACAAACACATACAAATCTATAGGGAGAACATTCGTCTTAGAGCCGAAACCATTTTTAATGAATGAACAAGAAAAGAAG |
Microexon-tag Amino Acid Seq | MEELRQLSDDTNTYKSIGRTFVLEPKPFLMNEQEKK |
Microexon-tag spanning region | 209690322-209692660 |
Microexon-tag prediction score | 0.9714 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | OTG12422x |
Reference Transcript ID | OTG12422 |
Gene ID | HannXRQ_Chr10g0309491 |
Gene Name | PFD1 |
Transcript ID | OTG12422 |
Protein ID | OTG12422 |
Gene ID | HannXRQ_Chr10g0309491 |
Gene Name | PFD1 |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 5.4e-20 |
Motif start | 13 |
Motif end | 115 |
Protein seq | >OTG12422 MADEANKTAFVEIQSRMIETTAKLKQVQNQMRNKESEKKRAYLTLEELRQLSDDTNTYKSIGRTFVLEPKPFLMNEQEKK LKDSETAIASLQTSKEYLEKQLTEVEANLRELLQQDPGLAHQIMSMAAV* |
CDS seq | >OTG12422 ATGGCTGATGAAGCAAACAAAACAGCGTTTGTGGAAATTCAAAGTCGCATGATTGAGACAACTGCAAAATTGAAACAGGT TCAAAACCAGATGCGAAACAAGGAAAGTGAAAAGAAGCGTGCTTATTTAACCTTGGAGGAACTACGACAGCTGTCTGATG ACACAAACACATACAAATCTATAGGGAGAACATTCGTCTTAGAGCCGAAACCATTTTTAATGAATGAACAAGAAAAGAAG CTCAAGGATAGTGAAACTGCCATAGCCTCTTTACAGACTTCAAAGGAGTACCTTGAGAAACAATTGACAGAGGTGGAAGC TAACTTGAGGGAGCTTCTGCAACAAGATCCGGGTCTTGCTCACCAGATAATGTCCATGGCTGCCGTGTAA |
Microexon DNA seq | GGAGAAC |
Microexon Amino Acid seq | GRT |
Microexon-tag DNA Seq | TTGGAGGAACTACGACAGCTGTCTGATGACACAAACACATACAAATCTATAGGGAGAACATTCGTCTTAGAGCCGAAACCATTTTTAATGAATGAACAAGAAAAGAAG |
Microexon-tag Amino Acid seq | MEELRQLSDDTNTYKSIGRTFVLEPKPFLMNEQEKK |
Transcript ID | OTG12422 |
Gene ID | Ha.6440 |
Gene Name | PFD1 |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 5.4e-20 |
Motif start | 13 |
Motif end | 115 |
Protein seq | >OTG12422 MADEANKTAFVEIQSRMIETTAKLKQVQNQMRNKESEKKRAYLTLEELRQLSDDTNTYKSIGRTFVLEPKPFLMNEQEKK LKDSETAIASLQTSKEYLEKQLTEVEANLRELLQQDPGLAHQIMSMAAV* |
CDS seq | >OTG12422 ATGGCTGATGAAGCAAACAAAACAGCGTTTGTGGAAATTCAAAGTCGCATGATTGAGACAACTGCAAAATTGAAACAGGT TCAAAACCAGATGCGAAACAAGGAAAGTGAAAAGAAGCGTGCTTATTTAACCTTGGAGGAACTACGACAGCTGTCTGATG ACACAAACACATACAAATCTATAGGGAGAACATTCGTCTTAGAGCCGAAACCATTTTTAATGAATGAACAAGAAAAGAAG CTCAAGGATAGTGAAACTGCCATAGCCTCTTTACAGACTTCAAAGGAGTACCTTGAGAAACAATTGACAGAGGTGGAAGC TAACTTGAGGGAGCTTCTGCAACAAGATCCGGGTCTTGCTCACCAGATAATGTCCATGGCTGCCGTGTAA |