
Microexon ID | At_2:3046227-3046233:+ |
Species | Arabidopsis thaliana | Coordinates | 2:3046227..3046233 |
Microexon Cluster ID | MEP14 |
Size | 7 |
Phase | 1 |
Pfam Domain Motif | Prefoldin_2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 52,7,49 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTGGAGGARCTGMRVCARYTRYCTGATGAYACAAAYACWTACAARTCYATWGGRARAAYGTTTRTTTTRGAGCCMAARTCAGTTYTRRTGRATGARCARGARMARAAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAAGAAC |
Microexon Amino Acid seq | GRT |
Microexon-tag DNA Seq | TTGGAGGAGCTGAGGCCATTGCCTGAAGAGACAAACACCTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACAAGAGCAAAAA |
Microexon-tag Amino Acid Seq | MEELRPLPEETNTYKSIGRTFVLEPKTVLEGEQEQK |
Microexon-tag spanning region | 3046096-3046362 |
Microexon-tag prediction score | 0.9588 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT2G07340.1x |
Reference Transcript ID | AT2G07340.1 |
Gene ID | AT2G07340 |
Gene Name | PFD1 |
Transcript ID | AT2G07340.1 |
Protein ID | AT2G07340.1 |
Gene ID | AT2G07340 |
Gene Name | PFD1 |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 6.3e-21 |
Motif start | 12 |
Motif end | 115 |
Protein seq | >AT2G07340.1 MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIGRTFVLEPKTVLEGEQEQK LKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIAQQIMSMSM* |
CDS seq | >AT2G07340.1 ATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGGT GCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAAG AGACAAACACCTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACAAGAGCAAAAA CTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAA CAACTTGAGGGAGCTGTTGCAGCAAGAACCGGGCATTGCTCAACAGATTATGTCCATGTCTATGTAA |
Microexon DNA seq | GAAGAAC |
Microexon Amino Acid seq | GRT |
Microexon-tag DNA Seq | TTGGAGGAGCTGAGGCCATTGCCTGAAGAGACAAACACCTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACAAGAGCAAAAA |
Microexon-tag Amino Acid seq | MEELRPLPEETNTYKSIGRTFVLEPKTVLEGEQEQK |
Transcript ID | AT2G07340.1 |
Gene ID | At.7927 |
Gene Name | PFD1 |
Pfam domain motif | Prefoldin_2 |
Motif E-value | 6.5e-21 |
Motif start | 12 |
Motif end | 115 |
Protein seq | >AT2G07340.1 MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIGRTFVLEPKTVLEGEQEQK LKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIAQQIMSMSM* |
CDS seq | >AT2G07340.1 ATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGGT GCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAAG AGACAAACACCTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACAAGAGCAAAAA CTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAA CAACTTGAGGGAGCTGTTGCAGCAAGAACCGGGCATTGCTCAACAGATTATGTCCATGTCTATGTAA |