
Microexon ID | Sl_7:8742799-8742805:+ |
Species | Solanum Lycopersicum | Coordinates | 7:8742799..8742805 |
Microexon Cluster ID | MEP13 |
Size | 7 |
Phase | 0 |
Pfam Domain Motif | DNA_ligase_A_M |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 13,38,7,50 |
Microexon location in the Microexon-tag | 3 |
Microexon-tag DNA Seq | AAYCAGGAAATWGCMAAGGCWGCAARRGAKGGRYTKGMSASTGATMGACAGTTRTGYTATGTTGCWTTTGAYRTTCTKTATGYTGGAGAYACYAGYGTYATYCAYCAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTGTGTT |
Microexon Amino Acid seq | LCY |
Microexon-tag DNA Seq | AATCAAGAAATAGCAAAGGCAGCAAGAGAGGGTCTTGATAGTGATAGGCAGTTGTGTTATGTTGCGTTCGATATTCTTTATGTTGGGGATACCAGTGTTATTCATCGG |
Microexon-tag Amino Acid Seq | NQEIAKAAREGLDSDRQLCYVAFDILYVGDTSVIHR |
Microexon-tag spanning region | 8742520-8742992 |
Microexon-tag prediction score | 0.9391 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Solyc07g018000.3.1x |
Reference Transcript ID | Solyc07g018000.3.1 |
Gene ID | Solyc07g018000.3 |
Gene Name | NA |
Transcript ID | Solyc07g018000.3.1 |
Protein ID | |
Gene ID | Solyc07g018000.3 |
Gene Name | |
Pfam domain motif | DNA_ligase_A_M |
Motif E-value | 2.00E-41 |
Motif start | 241 |
Motif end | 456 |
Protein seq | >Solyc07g018000.3.1 MATSAVDGGGNSSVGGEDIKFSVMVSLFKWIQKSKSSVKKRSKFRKFMDTFCRKPQDNFVAMRLILPGLDRERGSYGLKE HVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNFSLVAAEVLQRRQGMASAGLTIKELNDFLDHLASSENRAEK TSILSDLIRKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVR PQLALRVSNVSAAWKKLYGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMSDVITQNILADKCILDGEMLV WDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILYVGDTSVIHRSLKERQEILQKVVKPIKGRLEILVPNGGLNA HRLSGEPCWSIIAHSVDDVDKFFKGTVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPDYVRPGSDLDVLIIGGYYGSGRH GGEVAQFLVGLAEPPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAPPTFYQVTNNSKERPDVWVES PEKYISIIVSITSDIRTTRTEVFAAPYSLRFPRIDKVRYDKPWHECLDVQSFVDLVHSTNGTTQREDNYGVEQDHESKTI RSSRKREKKNVFAVPSHFVQTDVSRIKGETSMFSDMVFYFANVPSSHTLESLHKMVVEHGGAFSMNLNKSVTHCIAAESR GIKFQAAKLHGDVIQCSWLFDCCLQKKLLPLQPKYFLFLSDSTKKKMEAEVDEYSDSFFSDISIEEIKLLLRNIEHPEDS KTVEYYKKKYCPKDEWARFHGCCIYFFIPKQCLEYSDCKVLVELAMKRMKVEISVGGGKVGDNLFHATHVVVMSLPEIDV KFNEVLNSFSEAEKHVLYNTKLHVVGARWLEDSLKEDQKLLEESYSLKPSNFQMSISEKSRHDKQKGDSEKCKRPSSLDK HGGQIKAKGISDQGRAITLPKRGRKRDRGRPTGSATAKGKVGINIPRTVKRKVTSSRAKIHENESDESATSCEHLRNDEG EAAVGSYETTAVRSSGVQNEDVQDLELSEDGKTLPPGTAECSVINERLDKAHETSYGSGNIARGKDKVDEKLEDPVDPVQ AMLLHMIPHLDSKPTRSIDTLVKDDKPDADTNPSPKKKKKISYKDVAGELLKDW* |
CDS seq | >Solyc07g018000.3.1 ATGGCGACTTCCGCCGTAGACGGTGGTGGTAATAGTAGTGTTGGCGGAGAAGACATAAAATTTAGTGTAATGGTTAGCCT TTTTAAGTGGATACAGAAGAGTAAATCATCAGTGAAGAAGCGGTCCAAGTTCCGGAAGTTTATGGATACCTTCTGCAGGA AGCCTCAGGACAATTTCGTTGCCATGCGCCTTATTCTCCCTGGCCTCGACCGTGAGCGTGGCTCTTATGGCCTTAAGGAG CACGTCCTCGCTACTTGCCTCATTGACGCACTTGCAATGTCCCGCGATTCCGATGATGCACGCCGTCTCCTTAACTGGCG GAAAGGCGGTCCCAAAACTGGCTCTAATGCCGGCAACTTCTCTCTTGTTGCCGCTGAGGTCCTCCAGCGCAGACAGGGAA TGGCTTCTGCTGGGCTAACAATTAAGGAACTAAATGACTTCCTTGATCACTTGGCCTCAAGTGAAAATAGAGCAGAGAAG ACTTCAATTCTGTCTGATCTAATCAGGAAAACAAATGCTCAAGAAATGAAATGGATTATAATGATAATCCTCAAAGATCT TAAGTTGGGAATTAGTGAAAAGAGCATCTTCCATGAATTCCATCCAGATGCAGAGGACTTATTCAATGTCACATGCGATC TAAAATTAGTTTGTGAAAAGTTGAGGGACAGAAGTCAACGACATAAACGCCAGGATATTGAAGTTGGAAAACCTGTCCGC CCTCAGCTGGCTCTTAGGGTCAGCAATGTATCTGCTGCATGGAAAAAGCTTTACGGGAAAGAAGTAGTTGTTGAGTGCAA ATTTGATGGGGATCGCATCCAGATTCACAAAAATAATTCTGAGCTAAACTTCTTTTCAAGAAACTTTCTGGATCATCAAG AGTATGCTCATGGGATGTCAGATGTTATTACTCAGAATATCCTCGCTGACAAGTGCATACTCGATGGTGAAATGTTGGTT TGGGATGCATCAATAAACCGCTTTGCAGAGTTCGGTTCCAATCAAGAAATAGCAAAGGCAGCAAGAGAGGGTCTTGATAG TGATAGGCAGTTGTGTTATGTTGCGTTCGATATTCTTTATGTTGGGGATACCAGTGTTATTCATCGGAGCTTGAAGGAAC GTCAAGAGATTCTCCAGAAAGTTGTGAAGCCCATAAAAGGCCGTTTAGAAATTTTGGTCCCTAATGGCGGTCTTAATGCT CATCGTCTTTCTGGGGAGCCCTGTTGGTCGATCATTGCTCATAGTGTTGACGATGTCGATAAATTCTTTAAAGGAACTGT TGAGAATAGAGACGAAGGAATAGTTTTGAAAGATTTAACTTCAAAATGGGAACCAAGTGATCGGAGTGGAAAATGGCTAA AGTTGAAGCCTGATTATGTTCGACCTGGCTCTGATTTGGATGTTCTTATTATCGGAGGCTACTATGGTTCTGGGCGACAT GGAGGAGAGGTAGCTCAATTTCTGGTGGGTCTTGCTGAGCCTCCGGCTCCAAATACATATCCCAGAAGGTTCATTTCTTT TTGCAGAGTAGGCACTGGAGTTTCTGATGAGGAACGCAATACCATAGTAACTCGATTAAAACCTTATTTCAGGAAGTATG AGTACCCGAAGCAGGCACCACCAACCTTTTATCAAGTAACAAATAATTCAAAAGAGCGACCCGACGTGTGGGTTGAAAGT CCAGAGAAGTATATATCCATCATTGTTTCAATTACAAGTGATATTAGAACAACAAGAACTGAGGTGTTTGCTGCTCCATA CAGCTTGAGATTTCCGCGTATTGATAAAGTCAGATATGACAAGCCTTGGCATGAGTGTCTTGATGTGCAATCATTTGTTG ATCTGGTACATTCAACCAATGGTACCACGCAGAGGGAGGACAATTATGGGGTTGAGCAGGATCATGAATCAAAGACCATT AGGTCGTCAAGAAAACGAGAGAAGAAGAATGTCTTTGCAGTTCCTTCTCATTTTGTTCAGACTGACGTGTCTCGAATTAA GGGTGAAACATCAATGTTCTCTGACATGGTGTTTTATTTTGCTAATGTGCCTTCATCACATACACTAGAATCCTTGCATA AAATGGTTGTTGAGCATGGGGGTGCTTTCTCCATGAATTTGAATAAGTCAGTTACTCATTGTATAGCAGCTGAAAGTAGA GGTATCAAGTTTCAAGCTGCAAAACTTCATGGAGATGTTATTCAATGCTCTTGGCTCTTTGACTGCTGTCTGCAAAAGAA GCTCCTTCCTTTACAGCCAAAGTATTTTCTTTTCCTTTCTGATTCAACAAAGAAAAAGATGGAAGCAGAAGTGGATGAAT ATTCTGATTCTTTCTTCTCCGACATCAGCATTGAAGAAATTAAACTGCTTTTGAGAAATATAGAACACCCAGAAGACTCC AAAACTGTCGAGTACTACAAGAAAAAGTACTGTCCCAAGGATGAATGGGCTCGGTTTCATGGTTGCTGCATTTATTTTTT CATACCAAAGCAGTGTCTGGAATATTCAGATTGCAAGGTTTTAGTGGAACTTGCTATGAAGAGGATGAAAGTTGAAATTT CTGTTGGTGGTGGGAAAGTTGGTGACAATCTTTTTCATGCCACCCATGTCGTCGTCATGTCTCTACCAGAGATCGATGTA AAGTTCAATGAAGTGTTAAATAGTTTCTCAGAGGCTGAGAAACATGTTTTGTACAATACAAAGCTGCATGTAGTCGGAGC ACGGTGGTTGGAGGATTCCCTTAAAGAGGACCAGAAGTTGCTTGAGGAGAGTTATAGCCTTAAGCCTAGCAATTTTCAAA TGTCAATCTCTGAGAAGAGTAGGCATGATAAGCAAAAAGGTGATTCTGAAAAGTGCAAAAGACCATCTTCCCTTGATAAA CATGGAGGACAAATCAAAGCAAAAGGAATTTCAGACCAGGGCCGAGCTATCACACTACCAAAGAGGGGCAGGAAACGAGA TAGAGGAAGACCTACTGGTAGTGCTACAGCAAAAGGGAAAGTGGGGATCAACATTCCACGTACAGTTAAACGCAAGGTCA CAAGTAGTCGTGCTAAGATTCATGAAAATGAATCTGATGAAAGTGCTACTTCATGTGAGCATCTTCGTAATGACGAGGGT GAAGCGGCTGTTGGGAGCTATGAAACTACTGCAGTACGTAGCTCAGGAGTTCAGAATGAGGATGTACAGGATCTGGAATT GTCAGAAGATGGTAAAACACTTCCACCAGGGACTGCTGAATGCAGTGTGATCAATGAAAGATTGGACAAAGCTCACGAAA CTTCATATGGAAGTGGAAATATTGCCAGGGGCAAAGACAAGGTGGATGAAAAGCTGGAAGACCCTGTTGATCCAGTCCAA GCTATGCTATTGCATATGATACCCCACTTGGATAGTAAGCCAACAAGAAGCATAGACACTCTTGTAAAAGACGACAAGCC AGATGCAGATACTAATCCCAGTCCTAAAAAGAAAAAGAAAATTAGCTATAAAGATGTAGCTGGTGAGTTGCTCAAAGATT GGTGA |
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