| Microexon ID | Bn_scaffoldC09:51514622-51514628:- |
| Species | Brassica Napus | Coordinates | scaffoldC09:51514622..51514628 |
| Microexon Cluster ID | MEP13 |
| Size | 7 |
| Phase | 0 |
| Pfam Domain Motif | DNA_ligase_A_M |
| Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 13,38,7,50 |
| Microexon location in the Microexon-tag | 3 |
| Microexon-tag DNA Seq | AAYCAGGAAATWGCMAAGGCWGCAARRGAKGGRYTKGMSASTGATMGACAGTTRTGYTATGTTGCWTTTGAYRTTCTKTATGYTGGAGAYACYAGYGTYATYCAYCAR |
| Logo of Microexon-tag DNA Seq |  |
| Alignment of exons |  |
| Microexon DNA seq | TTATGTT |
| Microexon Amino Acid seq | LCY |
| Microexon-tag DNA Seq | AATCAGGAAATAGTCAAAGCAGCAAGGGAGGGTCTCGACAGCCATAGACAGTTATGTTATGTTGCCTTTGATGTTCTTTATGTTGGCGATACTAGTGTCATCCACCAG |
| Microexon-tag Amino Acid Seq | NQEIVKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQ |
| Microexon-tag spanning region | 51514479-51514860 |
| Microexon-tag prediction score | 0.9441 |
| Overlapped with the annotated transcript (%) | 100 |
| New Transcript ID | BnaC09T0404700ZSx |
| Reference Transcript ID | BnaC09T0404700ZS |
| Gene ID | BnaC09G0404700ZS |
| Gene Name | NA |
| Transcript ID | BnaC09T0404700ZS |
| Protein ID | |
| Gene ID | BnaC09G0404700ZS |
| Gene Name | |
| Pfam domain motif | DNA_ligase_A_M |
| Motif E-value | 3.70E-42 |
| Motif start | 227 |
| Motif end | 442 |
| Protein seq | >BnaC09T0404700ZS MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFAAVRLIIPSLDRERGSYGLKESVLATCLIDALGISR DAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASGGLSVKELNDLLDRLASSENRGEKTSVLSTLIQKTNAQ EMKWVIRIILKDLKLGMSERSIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIMADRCILDGEMLVWDTSLNRFAEFGSN QEIVKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLTERHGLLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVH SAADVERFFKETVENRDEGVVLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADR AETNVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIESPEKSIILSITSDIR TIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESMQDNPKVIKSSKRGGEKKNASLVPS QFIQTDVSDIKGKTSIFSNMIFYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF SWVLDCCSRNILLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQSEDSKSIEYYKKKLCPEKRW SCFIGCCIYFHLYCETLSIEEEALLGIMAKRLALEVLMGGGKVSHNLSHASHLVVLSTAEETLDFTSVSKSFSEKEKRLL LKRRLHVVNSNWLEDSLQREQKLSEDVYTLRPKSMEESDTEESDKSEHDTTEVASGVSAQTEEPASSKMAVTSSRGRSST RAGNKRGRSSTNSVKRVQRRRGKQPSKIGGSETEESDTASEEKASTRLSDDIAEETGDTQRNSRRGRSAKRGKSRVAQPQ RVQRSRRGNKPLKIGGDESEENDDFDDKKNDSAEEENKEETGEPDKAKQRDNTVTVEEASSKDSRNAKTEIDREEKIQIH EDPLQAMLMNMIPSLSLRNTSRTTGDASTANVCGESESSERRKLGAETDNTCVMNAEAGEVPPPVKKKKVSYRDVAGELL KDW* |
| CDS seq | >BnaC09T0404700ZS ATGACGGAGGAGATCAAATTAAGCGTACTAGTGTCTCTGTTCAACTGGATTCAGAAGAGCAAAACCTCATCCCAGAAACG CTCCAAGTTCCGCAAGTTCCTCGACACCTACTGCAAACCCTCCGATTACTTCGCCGCCGTCCGTCTCATCATCCCGTCGC TCGACCGAGAGCGAGGCAGCTACGGTCTCAAGGAGTCTGTGCTCGCCACGTGTCTCATCGACGCCCTCGGAATCTCTCGC GATGCTCCCGACGCGGTTCGCCTTCTCAATTGGCGCAAAGGAGGAACCGCTAAGGCTGGAGCCAACGCCGGAAACTTCTC TTTGATTGCTGCTGAGGTACTGCAACGTAGGCAAGGGATGGCGTCGGGTGGGTTGAGTGTTAAGGAGTTGAATGATTTGC TTGATCGTTTGGCTTCGAGTGAGAACAGAGGGGAGAAGACTTCTGTTCTTTCTACGCTGATTCAGAAGACGAATGCACAG GAGATGAAGTGGGTCATTAGGATCATTCTTAAAGATTTGAAGCTGGGGATGAGCGAGAGGAGCATATTTCAGGAGTTCCA TCCAGATGCTGAGGACTTGTTTAATGTCACTTGTGACTTGAAACTAGTCTGTGAAAAGCTCAGGGATCGCCACCAACGTC ACAAGCGCCAGGATATAGAAGTTGGAAAAGCTGTACGACCCCAGTTAGCTATGCGTATCAGTGACGTGAATGCTGCTTGG AAGAAGCTCCACGGGAAAGATGTAGTTGCTGAGTGCAAATTTGATGGGGATCGCATTCAGATACACAAAAATGGGACTGA GATACATTACTTCTCTAGGAACTTCCTTGACCATTCTGAATATGCACATGCCATGTCGGATCTTATCGTACAAAATATAA TGGCTGACAGGTGTATCCTTGATGGTGAAATGTTGGTTTGGGATACATCTCTTAATCGGTTTGCTGAATTTGGTTCGAAT CAGGAAATAGTCAAAGCAGCAAGGGAGGGTCTCGACAGCCATAGACAGTTATGTTATGTTGCCTTTGATGTTCTTTATGT TGGCGATACTAGTGTCATCCACCAGAGTTTAACAGAACGGCACGGACTCCTGAGGAAAGTGGTGAAGCCGTTAAAAGGCC GGCTTGAAGTTTTAGTGCCTGAAGGTGGTCTCAATGTTCATCGCCCTTCAGGGGAACCAAGTTGGTCTATTGTGGTTCAT TCTGCAGCTGATGTTGAGCGGTTTTTCAAAGAAACAGTTGAAAATAGGGATGAAGGAGTTGTGCTTAAAGACCTGGGATC GAAATGGGAACCTGGAGATCGCAGTGGCAAGTGGTTGAAGTTGAAGCCTGAATATGTCCGGGCTGGTTCTGATCTAGATG TTCTTATAATAGGAGGATACTATGGCTCTGGCCGTCACGGAGGAGAGGTAGCACAGTTTCTCGTTGGGTTGGCTGACCGG GCAGAGACAAATGTGTATCCCAGGCGATTTATGTCGTTTTGTAGAGTTGGCACAGGACTTTCTGATGAAGAGCTTAACAC TGTTGTAAGCAAACTGAAGCCTTATTTCAGAAAAAATGAACACCCAAAGAAGGCCCCACCAAGCTTTTATCAGGTCACAA ATCACTCAAAAGAGAGACCTGATGTTTGGATTGAAAGCCCGGAAAAATCAATAATACTCTCCATCACTAGTGACATCAGG ACAATAAGGTCTGAGGTTTTTGTCGCACCTTACAGCCTGAGGTTTCCTCGTATTGATAAAGTAAGATACGACAAACCTTG GCATGAATGTCTCGATGTGCAAGCTTTTGTGGAATTGGTGAACTCAAGTAACGGCACCACACAGAAACAGAAGGAATCCG AAAGCATGCAGGACAATCCGAAAGTCATTAAATCGTCCAAGAGAGGAGGAGAGAAAAAGAATGCGTCACTTGTCCCATCT CAGTTTATTCAAACTGATGTATCGGATATCAAGGGCAAGACCTCAATCTTCTCCAATATGATATTTTATTTTGTAAACCT GCCTCGGTCCCATTCTCTTGATACATTCCACAAAATGGTGGTTGAGAATGGAGGGAAGTTCTCGATGAACTTAAACAATT CAGTGACTCATTGCATTGCAGCGGAAAGCAGTGGAATAAAGTATCAGGCAGCAAAACGTCAAAGAGATGTCATCCACTTT TCATGGGTCTTAGATTGTTGTTCACGGAATATTCTGCTTCCTTTGCAGCCAAAGTACTTCCTCCATCTCACTGATGCTTC AAGGACCAAATTACAGGATGAAATTGACGAGTTTTCCGATTCTTATTTCTTTGATTTAGACCTTGAAGGTCTCAAACAGG TCTTGAGCAATGCCAAGCAATCGGAAGACTCAAAATCCATTGAATACTACAAGAAAAAGCTATGTCCGGAGAAAAGATGG TCCTGCTTCATCGGTTGCTGCATTTACTTTCACCTCTATTGTGAAACATTGAGTATTGAAGAGGAAGCTCTGTTGGGAAT CATGGCTAAGAGATTAGCGCTTGAAGTCTTAATGGGTGGTGGTAAAGTTAGCCATAATCTTTCTCATGCCTCGCACCTTG TAGTCCTTTCTACAGCAGAAGAGACTTTGGATTTTACTTCAGTTTCAAAAAGTTTCAGCGAAAAGGAGAAACGTCTTTTG CTGAAGAGAAGGCTACATGTTGTTAACTCGAACTGGTTAGAGGACAGTTTGCAAAGAGAGCAAAAACTAAGCGAGGATGT GTACACTCTGAGGCCTAAGAGTATGGAAGAGTCGGATACTGAAGAATCAGATAAATCTGAACATGATACAACGGAAGTAG CTTCCGGTGTTAGTGCTCAAACCGAAGAGCCAGCTTCCTCGAAAATGGCAGTTACGAGTTCAAGAGGACGGTCGAGTACT CGAGCTGGTAATAAAAGGGGAAGGTCTTCTACAAACTCAGTGAAACGAGTACAGAGACGCAGAGGGAAACAGCCTTCTAA GATAGGCGGAAGTGAAACAGAGGAGAGTGATACGGCTTCGGAAGAGAAGGCTTCAACAAGACTCAGTGATGATATAGCAG AAGAGACTGGTGATACTCAAAGAAACTCTAGGAGAGGAAGATCTGCAAAGAGAGGAAAGTCTCGTGTGGCACAACCCCAA AGAGTACAGAGATCAAGAAGAGGCAACAAGCCTTTGAAGATAGGAGGAGATGAGTCTGAGGAAAATGATGATTTTGATGA CAAGAAAAATGATTCCGCGGAGGAGGAAAACAAGGAAGAAACAGGAGAGCCTGACAAAGCAAAGCAAAGAGATAACACAG TAACAGTTGAAGAGGCCTCCTCAAAAGATTCTAGAAATGCAAAGACCGAGATAGATAGGGAAGAGAAGATACAAATCCAT GAGGATCCATTACAAGCAATGTTGATGAACATGATCCCAAGCCTCAGTCTGAGAAACACAAGCCGAACTACGGGCGACGC TAGTACGGCTAATGTTTGTGGTGAGAGTGAGTCTTCAGAGAGAAGAAAACTTGGCGCCGAGACTGATAATACGTGTGTGA TGAACGCAGAGGCAGGTGAAGTTCCTCCTCCTGTGAAGAAAAAGAAAGTTAGCTACCGCGATGTTGCAGGAGAACTGCTC AAAGACTGGTGA |
Bn_scaffoldC09:51514622-51514628:- does not have available information here.