Microexon ID Zm_3:127516119-127516124:-
Species Zea mays
Coordinates 3:127516119..127516124
Microexon Cluster ID MEP11
Size 6
Phase 0
Pfam Domain Motif TRAP_beta
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,6,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq YTGCCTYTDGAYRTYCTTGCWGAYAGRCCTCCWGAGAAGAAGTTTGAATKGGCTAAGAGRYTKBTGGCDAARTAYGGRTCWCTDRTYTCWGTGRTCTCCWTYGTKGTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GCTAAG
Microexon Amino Acid seq AK
Microexon-tag DNA Seq TTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGATGAAATACGGGTCACTTGTGTCTGTTGTCTCTTTTGTTGGA
Microexon-tag Amino Acid Seq FPLDILAERPPEKKFEWAKRLVMKYGSLVSVVSFVG
Microexon-tag spanning region127515946-127516298
Microexon-tag prediction score0.9612
Overlapped with the annotated transcript (%) 91.07
New Transcript ID Zm00001d041569_T001x
Reference Transcript ID Zm00001d041569_T001
Gene ID Zm00001d041569
Gene Name NA
Zm_3:127516119-127516124:- does not have available information here.
Microexon DNA seq GCTAAG
Microexon Amino Acid seq AK
Microexon-tag DNA Seq TTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGATGAAATACGGGTCACTTGTGTCTGTTGTCTCTTTTGTTGGA
Microexon-tag Amino Acid seq FPLDILAERPPEKKFEWAKRLVMKYGSLVSVVSFVG
Transcript ID Zm.14866.1
Gene ID Zm.14866
Gene Name NA
Pfam domain motif TRAP_beta
Motif E-value 1.5e-52
Motif start 12
Motif end 187
Protein seq >Zm.14866.1
MARCLALVALLVLGLAAAASAADAPFVVAHKKISLSRPKPGVERVAVSLDLYNQGSATAYDVSINDDSWPTEVFELVTGE
KSKTLERLDPGATASHTYVLETKTQGRFQGSPAIITYRVPTKTALQEAYSTPIFPLDILAERPPEKKFEWAKRLVMKYGS
LVSVVSFVGLFIYLVASPSKSSSKASKKRR*
CDS seq >Zm.14866.1
ATGGCGCGGTGCCTCGCGCTCGTCGCCCTCCTCGTACTCGGCCTCGCCGCCGCCGCCTCCGCGGCCGACGCGCCCTTCGT
CGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACC
AGGGATCCGCGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAG
AAATCGAAGACATTGGAAAGGCTTGACCCTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
GTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGGAGGCATACTCAACTCCCATCT
TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGATGAAATACGGGTCA
CTTGTGTCTGTTGTCTCTTTTGTTGGACTGTTTATCTACCTTGTCGCGAGCCCGTCGAAGAGCAGCTCAAAGGCAAGCAA
GAAGAGACGCTGA