
Microexon ID | Zm_3:127516119-127516124:- |
Species | Zea mays | Coordinates | 3:127516119..127516124 |
Microexon Cluster ID | MEP11 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | TRAP_beta |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTGCCTYTDGAYRTYCTTGCWGAYAGRCCTCCWGAGAAGAAGTTTGAATKGGCTAAGAGRYTKBTGGCDAARTAYGGRTCWCTDRTYTCWGTGRTCTCCWTYGTKGTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | TTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGATGAAATACGGGTCACTTGTGTCTGTTGTCTCTTTTGTTGGA |
Microexon-tag Amino Acid Seq | FPLDILAERPPEKKFEWAKRLVMKYGSLVSVVSFVG |
Microexon-tag spanning region | 127515946-127516298 |
Microexon-tag prediction score | 0.9612 |
Overlapped with the annotated transcript (%) | 91.07 |
New Transcript ID | Zm00001d041569_T001x |
Reference Transcript ID | Zm00001d041569_T001 |
Gene ID | Zm00001d041569 |
Gene Name | NA |
Zm_3:127516119-127516124:- does not have available information here.
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | TTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGATGAAATACGGGTCACTTGTGTCTGTTGTCTCTTTTGTTGGA |
Microexon-tag Amino Acid seq | FPLDILAERPPEKKFEWAKRLVMKYGSLVSVVSFVG |
Transcript ID | Zm.14866.1 |
Gene ID | Zm.14866 |
Gene Name | NA |
Pfam domain motif | TRAP_beta |
Motif E-value | 1.5e-52 |
Motif start | 12 |
Motif end | 187 |
Protein seq | >Zm.14866.1 MARCLALVALLVLGLAAAASAADAPFVVAHKKISLSRPKPGVERVAVSLDLYNQGSATAYDVSINDDSWPTEVFELVTGE KSKTLERLDPGATASHTYVLETKTQGRFQGSPAIITYRVPTKTALQEAYSTPIFPLDILAERPPEKKFEWAKRLVMKYGS LVSVVSFVGLFIYLVASPSKSSSKASKKRR* |
CDS seq | >Zm.14866.1 ATGGCGCGGTGCCTCGCGCTCGTCGCCCTCCTCGTACTCGGCCTCGCCGCCGCCGCCTCCGCGGCCGACGCGCCCTTCGT CGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACC AGGGATCCGCGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAG AAATCGAAGACATTGGAAAGGCTTGACCCTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG GTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGGAGGCATACTCAACTCCCATCT TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGATGAAATACGGGTCA CTTGTGTCTGTTGTCTCTTTTGTTGGACTGTTTATCTACCTTGTCGCGAGCCCGTCGAAGAGCAGCTCAAAGGCAAGCAA GAAGAGACGCTGA |