
Microexon ID | Zm_1:153226649-153226654:+ |
Species | Zea mays | Coordinates | 1:153226649..153226654 |
Microexon Cluster ID | MEP11 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | TRAP_beta |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTGCCTYTDGAYRTYCTTGCWGAYAGRCCTCCWGAGAAGAAGTTTGAATKGGCTAAGAGRYTKBTGGCDAARTAYGGRTCWCTDRTYTCWGTGRTCTCCWTYGTKGTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | TTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGGA |
Microexon-tag Amino Acid Seq | FPLDILAERLPEKKFEWAKRLVAKYGSLVSVVSFVG |
Microexon-tag spanning region | 153226475-153226830 |
Microexon-tag prediction score | 0.9683 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d030690_T001x |
Reference Transcript ID | Zm00001d030690_T001 |
Gene ID | Zm00001d030690 |
Gene Name | NA |
Transcript ID | Zm00001d030690_T001 |
Protein ID | Zm00001d030690_P001 |
Gene ID | Zm00001d030690 |
Gene Name | NA |
Pfam domain motif | TRAP_beta |
Motif E-value | 6.4e-47 |
Motif start | 14 |
Motif end | 195 |
Protein seq | >Zm00001d030690_P001 MARCLALVSLLLLGLASAASAADAPFVVAHKKVSLSRPKPGVERVAVSLDLYNQGSAICMDLCKAYCRTAYDVSLNDDSW PTQAFELVTGEKSKTLERLDPGATATHTYVLETKTQGRFQGSPAIITYRVPTKTALQEAYSTPIFPLDILAERLPEKKFE WAKRLVAKYGSLVSVVSFVGLFIYLVASPSKSSSKGSKKRR* |
CDS seq | >Zm00001d030690_T001 ATGGCGCGGTGCCTCGCGCTCGTCTCCCTCCTTCTCCTCGGCCTCGCCTCCGCCGCCTCCGCTGCCGATGCGCCCTTTGT CGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACC AGGGATCCGCCATCTGCATGGACTTATGTAAAGCCTATTGCAGGACTGCCTATGATGTGTCACTTAATGACGACTCTTGG CCAACACAAGCATTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCTGGTGCCACTGCTACACA CACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGA CTGCTCTTCAGGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAA TGGGCTAAGAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGGATTGTTTATCTACCTCGTTGC GAGCCCGTCGAAGAGCAGCTCAAAAGGAAGCAAGAAGAGACGTTGA |
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | TTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGCTAAGAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGGA |
Microexon-tag Amino Acid seq | FPLDILAERLPEKKFEWAKRLVAKYGSLVSVVSFVG |
Transcript ID | Zm00001d030690_T001 |
Gene ID | Zm.2556 |
Gene Name | NA |
Pfam domain motif | TRAP_beta |
Motif E-value | 6.5e-47 |
Motif start | 14 |
Motif end | 195 |
Protein seq | >Zm00001d030690_T001 MARCLALVSLLLLGLASAASAADAPFVVAHKKVSLSRPKPGVERVAVSLDLYNQGSAICMDLCKAYCRTAYDVSLNDDSW PTQAFELVTGEKSKTLERLDPGATATHTYVLETKTQGRFQGSPAIITYRVPTKTALQEAYSTPIFPLDILAERLPEKKFE WAKRLVAKYGSLVSVVSFVGLFIYLVASPSKSSSKGSKKRR* |
CDS seq | >Zm00001d030690_T001 ATGGCGCGGTGCCTCGCGCTCGTCTCCCTCCTTCTCCTCGGCCTCGCCTCCGCCGCCTCCGCTGCCGATGCGCCCTTTGT CGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACC AGGGATCCGCCATCTGCATGGACTTATGTAAAGCCTATTGCAGGACTGCCTATGATGTGTCACTTAATGACGACTCTTGG CCAACACAAGCATTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCTGGTGCCACTGCTACACA CACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGA CTGCTCTTCAGGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAA TGGGCTAAGAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGGATTGTTTATCTACCTCGTTGC GAGCCCGTCGAAGAGCAGCTCAAAAGGAAGCAAGAAGAGACGTTGA |