Microexon ID Hv_3H:27776959-27776964:-
Species Hordeum   Vulgare
Coordinates 3H:27776959..27776964
Microexon Cluster ID MEP11
Size 6
Phase 0
Pfam Domain Motif TRAP_beta
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,6,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq YTGCCTYTDGAYRTYCTTGCWGAYAGRCCTCCWGAGAAGAAGTTTGAATKGGCTAAGAGRYTKBTGGCDAARTAYGGRTCWCTDRTYTCWGTGRTCTCCWTYGTKGTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GCTAAG
Microexon Amino Acid seq AK
Microexon-tag DNA Seq CCTGCCCTTGACATTCTTGCTGAAAGGCCTCCAGTGAAGAAGTTTGAATGGGCTAAGAAACTTGTTGCGAAGTACGGAGCACTGGTGTCTGTTGTTTCCTTCGTTCTG
Microexon-tag Amino Acid Seq PALDILAERPPVKKFEWAKKLVAKYGALVSVVSFVL
Microexon-tag spanning region27776838-27777144
Microexon-tag prediction score0.943
Overlapped with the annotated transcript (%) 100
New Transcript ID HORVU.MOREX.r3.3HG0231900.1x
Reference Transcript ID HORVU.MOREX.r3.3HG0231900.1
Gene ID HORVU.MOREX.r3.3HG0231900
Gene Name NA
Transcript ID HORVU.MOREX.r3.3HG0231900.1
Protein ID
Gene ID HORVU.MOREX.r3.3HG0231900
Gene Name
Pfam domain motif TRAP_beta
Motif E-value 1.00E-52
Motif start 13
Motif end 188
Protein seq >HORVU.MOREX.r3.3HG0231900.1
MATTRSLLLCAALLLAALSCAFAADAPFLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVS
GEVSKTLERLEPGATASHAFVLESKTQGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPPVKKFEWAKKLVAKY
GALVSVVSFVLGFIYLVASPSKSSGSKSGKKRR*
CDS seq >HORVU.MOREX.r3.3HG0231900.1
ATGGCAACGACGCGCTCGCTCCTCCTCTGCGCCGCGCTCCTCCTCGCCGCCCTCTCCTGCGCCTTCGCCGCCGACGCGCC
CTTCCTCGTCGCGCACAAGAAGGTGGCCCTCTCCCGCCCCAAGCCCGGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCT
ACAACCAGGGATCCGCAACTGCATATGATGTGGCCATTAATGACGACTCTTGGCCCAAGGAAGCATTTGAACTTGTCTCT
GGAGAGGTCTCAAAGACTTTGGAAAGGCTTGAACCTGGTGCCACTGCTTCGCACGCGTTTGTATTGGAGAGCAAAACACA
GGGAAGGTTCCAAGCTTCACCTGCTGTCATCAAGTACCGTGTTGCCACAAAGGCTGCACTTCAGGAGGCCTACTCAACTC
CCATCCCTGCCCTTGACATTCTTGCTGAAAGGCCTCCAGTGAAGAAGTTTGAATGGGCTAAGAAACTTGTTGCGAAGTAC
GGAGCACTGGTGTCTGTTGTTTCCTTCGTTCTGGGCTTCATCTACCTGGTCGCGAGCCCATCGAAATCTTCCGGCTCAAA
GTCTGGCAAGAAGAGGCGCTGA
Hv_3H:27776959-27776964:- does not have available information here.