
Microexon ID | Hv_3H:27776959-27776964:- |
Species | Hordeum Vulgare | Coordinates | 3H:27776959..27776964 |
Microexon Cluster ID | MEP11 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | TRAP_beta |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTGCCTYTDGAYRTYCTTGCWGAYAGRCCTCCWGAGAAGAAGTTTGAATKGGCTAAGAGRYTKBTGGCDAARTAYGGRTCWCTDRTYTCWGTGRTCTCCWTYGTKGTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | CCTGCCCTTGACATTCTTGCTGAAAGGCCTCCAGTGAAGAAGTTTGAATGGGCTAAGAAACTTGTTGCGAAGTACGGAGCACTGGTGTCTGTTGTTTCCTTCGTTCTG |
Microexon-tag Amino Acid Seq | PALDILAERPPVKKFEWAKKLVAKYGALVSVVSFVL |
Microexon-tag spanning region | 27776838-27777144 |
Microexon-tag prediction score | 0.943 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | HORVU.MOREX.r3.3HG0231900.1x |
Reference Transcript ID | HORVU.MOREX.r3.3HG0231900.1 |
Gene ID | HORVU.MOREX.r3.3HG0231900 |
Gene Name | NA |
Transcript ID | HORVU.MOREX.r3.3HG0231900.1 |
Protein ID | |
Gene ID | HORVU.MOREX.r3.3HG0231900 |
Gene Name | |
Pfam domain motif | TRAP_beta |
Motif E-value | 1.00E-52 |
Motif start | 13 |
Motif end | 188 |
Protein seq | >HORVU.MOREX.r3.3HG0231900.1 MATTRSLLLCAALLLAALSCAFAADAPFLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVS GEVSKTLERLEPGATASHAFVLESKTQGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPPVKKFEWAKKLVAKY GALVSVVSFVLGFIYLVASPSKSSGSKSGKKRR* |
CDS seq | >HORVU.MOREX.r3.3HG0231900.1 ATGGCAACGACGCGCTCGCTCCTCCTCTGCGCCGCGCTCCTCCTCGCCGCCCTCTCCTGCGCCTTCGCCGCCGACGCGCC CTTCCTCGTCGCGCACAAGAAGGTGGCCCTCTCCCGCCCCAAGCCCGGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCT ACAACCAGGGATCCGCAACTGCATATGATGTGGCCATTAATGACGACTCTTGGCCCAAGGAAGCATTTGAACTTGTCTCT GGAGAGGTCTCAAAGACTTTGGAAAGGCTTGAACCTGGTGCCACTGCTTCGCACGCGTTTGTATTGGAGAGCAAAACACA GGGAAGGTTCCAAGCTTCACCTGCTGTCATCAAGTACCGTGTTGCCACAAAGGCTGCACTTCAGGAGGCCTACTCAACTC CCATCCCTGCCCTTGACATTCTTGCTGAAAGGCCTCCAGTGAAGAAGTTTGAATGGGCTAAGAAACTTGTTGCGAAGTAC GGAGCACTGGTGTCTGTTGTTTCCTTCGTTCTGGGCTTCATCTACCTGGTCGCGAGCCCATCGAAATCTTCCGGCTCAAA GTCTGGCAAGAAGAGGCGCTGA |
Hv_3H:27776959-27776964:- does not have available information here.