
Microexon ID | Ha_17:68371464-68371469:- |
Species | Helianthus annuus | Coordinates | 17:68371464..68371469 |
Microexon Cluster ID | MEP11 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | TRAP_beta |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTGCCTYTDGAYRTYCTTGCWGAYAGRCCTCCWGAGAAGAAGTTTGAATKGGCTAAGAGRYTKBTGGCDAARTAYGGRTCWCTDRTYTCWGTGRTCTCCWTYGTKGTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | CTACCTCTTGAAATCCTATCAGATAAGCCTAAGGCGAGCGCACTTCATCTTGCTAAGAGAATGTTGGGTAATTATGGGTCGCTGGTATCTGTGATCTCCATTATGGTC |
Microexon-tag Amino Acid Seq | LPLEILSDKPKASALHLAKRMLGNYGSLVSVISIMV |
Microexon-tag spanning region | 68371306-68371630 |
Microexon-tag prediction score | 0.8978 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | OTF86443x |
Reference Transcript ID | OTF86443 |
Gene ID | HannXRQ_Chr17g0550841 |
Gene Name | NA |
Transcript ID | OTF86443 |
Protein ID | OTF86443 |
Gene ID | HannXRQ_Chr17g0550841 |
Gene Name | NA |
Pfam domain motif | TRAP_beta |
Motif E-value | 1.9e-44 |
Motif start | 17 |
Motif end | 192 |
Protein seq | >OTF86443 MAKFFTNSLLTLTTVVLLLIAPSVIDGSEAPFIVAHKKATLNRLKSGADKLSVSIDIYNRGSASAYDVSLTDDGWSPEIF KIISGNTSTSWERLDVGAVLSHSFELESNVKTVFYSTPAVITFRVPTKAALQEAYSTSLLPLEILSDKPKASALHLAKRM LGNYGSLVSVISIMVLFVYMVATPSKSGSAKGSKKKR* |
CDS seq | >OTF86443 ATGGCGAAATTCTTCACGAATTCTCTCCTCACCTTAACAACAGTAGTCCTGTTGTTGATCGCACCGTCGGTAATTGACGG ATCGGAGGCTCCGTTCATCGTAGCTCACAAGAAAGCTACACTCAATAGGCTCAAATCCGGTGCCGATAAACTCTCCGTTT CAATCGACATTTATAACCGTGGATCTGCGAGTGCATATGATGTTAGCCTCACTGATGACGGCTGGTCTCCCGAAATATTC AAAATCATCTCCGGAAACACTTCAACATCTTGGGAAAGGCTTGACGTTGGTGCCGTTCTATCTCACTCCTTTGAGCTGGA GTCAAATGTGAAAACCGTCTTCTATAGCACACCAGCTGTTATTACATTCCGTGTCCCCACAAAGGCTGCACTGCAGGAGG CATATTCGACATCACTCCTACCTCTTGAAATCCTATCAGATAAGCCTAAGGCGAGCGCACTTCATCTTGCTAAGAGAATG TTGGGTAATTATGGGTCGCTGGTATCTGTGATCTCCATTATGGTCTTATTTGTGTACATGGTGGCAACTCCATCCAAGTC CGGTTCTGCAAAGGGAAGCAAGAAGAAACGTTGA |
Microexon DNA seq | GCTAAG |
Microexon Amino Acid seq | AK |
Microexon-tag DNA Seq | CTACCTCTTGAAATCCTATCAGATAAGCCTAAGGCGAGCGCACTTCATCTTGCTAAGAGAATGTTGGGTAATTATGGGTCGCTGGTATCTGTGATCTCCATTATGGTC |
Microexon-tag Amino Acid seq | LPLEILSDKPKASALHLAKRMLGNYGSLVSVISIMV |
Transcript ID | OTF86443 |
Gene ID | Ha.30999 |
Gene Name | NA |
Pfam domain motif | TRAP_beta |
Motif E-value | 1.9e-44 |
Motif start | 17 |
Motif end | 192 |
Protein seq | >OTF86443 MAKFFTNSLLTLTTVVLLLIAPSVIDGSEAPFIVAHKKATLNRLKSGADKLSVSIDIYNRGSASAYDVSLTDDGWSPEIF KIISGNTSTSWERLDVGAVLSHSFELESNVKTVFYSTPAVITFRVPTKAALQEAYSTSLLPLEILSDKPKASALHLAKRM LGNYGSLVSVISIMVLFVYMVATPSKSGSAKGSKKKR* |
CDS seq | >OTF86443 ATGGCGAAATTCTTCACGAATTCTCTCCTCACCTTAACAACAGTAGTCCTGTTGTTGATCGCACCGTCGGTAATTGACGG ATCGGAGGCTCCGTTCATCGTAGCTCACAAGAAAGCTACACTCAATAGGCTCAAATCCGGTGCCGATAAACTCTCCGTTT CAATCGACATTTATAACCGTGGATCTGCGAGTGCATATGATGTTAGCCTCACTGATGACGGCTGGTCTCCCGAAATATTC AAAATCATCTCCGGAAACACTTCAACATCTTGGGAAAGGCTTGACGTTGGTGCCGTTCTATCTCACTCCTTTGAGCTGGA GTCAAATGTGAAAACCGTCTTCTATAGCACACCAGCTGTTATTACATTCCGTGTCCCCACAAAGGCTGCACTGCAGGAGG CATATTCGACATCACTCCTACCTCTTGAAATCCTATCAGATAAGCCTAAGGCGAGCGCACTTCATCTTGCTAAGAGAATG TTGGGTAATTATGGGTCGCTGGTATCTGTGATCTCCATTATGGTCTTATTTGTGTACATGGTGGCAACTCCATCCAAGTC CGGTTCTGCAAAGGGAAGCAAGAAGAAACGTTGA |