
Microexon ID | Zm_8:120715054-120715059:+ |
Species | Zea mays | Coordinates | 8:120715054..120715059 |
Microexon Cluster ID | MEP10 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | DUF4788 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | ATGGAG |
Microexon Amino Acid seq | ME |
Microexon-tag DNA Seq | TTTGAGGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGAT |
Microexon-tag Amino Acid Seq | FEDYIEPLKVYLQKYREMEGDSKLTSKSSDGSIKKD |
Microexon-tag spanning region | 120714255-120716248 |
Microexon-tag prediction score | 0.9424 |
Overlapped with the annotated transcript (%) | 94.44 |
New Transcript ID | Zm00001d010574_T001x |
Reference Transcript ID | Zm00001d010574_T001 |
Gene ID | Zm00001d010574 |
Gene Name | CCAAT-DR1-transcription factor 15 |
Zm_8:120715054-120715059:+ does not have available information here.
Microexon DNA seq | ATGGAG |
Microexon Amino Acid seq | ME |
Microexon-tag DNA Seq | TTTGAGGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGAT |
Microexon-tag Amino Acid seq | FEDYIEPLKVYLQKYREMEGDSKLTSKSSDGSIKKD |
Transcript ID | Zm.34264.1 |
Gene ID | Zm.34264 |
Gene Name | CCAAT-DR1-transcription factor 15 |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm.34264.1 MADAPASPGGGGGSHESGSPRGGGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEA SDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTSKSSDGSIKKDALGHVGASSSAVQGMGQQG TYNQGMGYMQPQYHNGDISN* |
CDS seq | >Zm.34264.1 ATGGCGGACGCTCCGGCGAGCCCTGGGGGCGGAGGCGGGAGCCACGAGAGCGGGAGCCCCAGGGGCGGCGGAGGTGGAGG CGGTGGCAGCGTCAGGGAGCAGGACAGGTTCCTGCCCATCGCCAACATCAGTCGCATCATGAAGAAGGCCATCCCGGCTA ACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAGGCG AGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGA GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGTAAGTTAACTTCAAAATCCA GCGATGGCTCCATTAAAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGTACAAGGGATGGGTCAGCAAGGA ACATACAACCAAGGAATGGGTTATATGCAACCTCAGTACCATAACGGAGATATCTCGAACTAA |