
Microexon ID | Zm_6:156317156-156317161:- |
Species | Zea mays | Coordinates | 6:156317156..156317161 |
Microexon Cluster ID | MEP10 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | DUF4788 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | ATGGAG |
Microexon Amino Acid seq | ME |
Microexon-tag DNA Seq | TTTGAAGACTACATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGCAAGTTAACTGCAAAATCTAGCGATGGCTCAATTAAAAAGGAT |
Microexon-tag Amino Acid Seq | FEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKD |
Microexon-tag spanning region | 156314434-156318316 |
Microexon-tag prediction score | 0.9489 |
Overlapped with the annotated transcript (%) | 94.44 |
New Transcript ID | Zm00001d038397_T002x |
Reference Transcript ID | Zm00001d038397_T002 |
Gene ID | Zm00001d038397 |
Gene Name | NF-YB homolog |
Zm_6:156317156-156317161:- does not have available information here.
Microexon DNA seq | ATGGAG |
Microexon Amino Acid seq | ME |
Microexon-tag DNA Seq | TTTGAAGACTACATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGCAAGTTAACTGCAAAATCTAGCGATGGCTCAATTAAAAAGGAT |
Microexon-tag Amino Acid seq | FEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKD |
Transcript ID | Zm.28660.1 |
Gene ID | Zm.28660 |
Gene Name | NF-YB homolog |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm.28660.1 MAEAPASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASD KCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSSAAQGGAYNQGM GYMQPQYHNGDISN* |
CDS seq | >Zm.28660.1 ATGGCGGAAGCTCCGGCGAGCCCTGGCGGCGGCGGCGGGAGCCACGAGAGCGGGAGCCCCAGGGGAGGCGGAGGCGGTGG CAGCGTCAGGGAGCAGGACAGGTTCCTGCCCATCGCCAACATCAGTCGCATCATGAAGAAGGCCATCCCGGCTAACGGGA AGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACTAGCGAAGCGAGTGAC AAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGATCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAAGACTA CATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGCAAGTTAACTGCAAAATCTAGCGATG GCTCAATTAAAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGGGGAGCATACAACCAAGGAATG GGTTATATGCAACCCCAGTACCATAACGGGGATATCTCAAACTAA |