Microexon ID Zm_6:156317156-156317161:-
Species Zea mays
Coordinates 6:156317156..156317161
Microexon Cluster ID MEP10
Size 6
Phase 0
Pfam Domain Motif DUF4788
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,6,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq ATGGAG
Microexon Amino Acid seq ME
Microexon-tag DNA Seq TTTGAAGACTACATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGCAAGTTAACTGCAAAATCTAGCGATGGCTCAATTAAAAAGGAT
Microexon-tag Amino Acid Seq FEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKD
Microexon-tag spanning region156314434-156318316
Microexon-tag prediction score0.9489
Overlapped with the annotated transcript (%) 94.44
New Transcript ID Zm00001d038397_T002x
Reference Transcript ID Zm00001d038397_T002
Gene ID Zm00001d038397
Gene Name NF-YB homolog
Zm_6:156317156-156317161:- does not have available information here.
Microexon DNA seq ATGGAG
Microexon Amino Acid seq ME
Microexon-tag DNA Seq TTTGAAGACTACATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGCAAGTTAACTGCAAAATCTAGCGATGGCTCAATTAAAAAGGAT
Microexon-tag Amino Acid seq FEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKD
Transcript ID Zm.28660.1
Gene ID Zm.28660
Gene Name NF-YB homolog
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >Zm.28660.1
MAEAPASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASD
KCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSSAAQGGAYNQGM
GYMQPQYHNGDISN*
CDS seq >Zm.28660.1
ATGGCGGAAGCTCCGGCGAGCCCTGGCGGCGGCGGCGGGAGCCACGAGAGCGGGAGCCCCAGGGGAGGCGGAGGCGGTGG
CAGCGTCAGGGAGCAGGACAGGTTCCTGCCCATCGCCAACATCAGTCGCATCATGAAGAAGGCCATCCCGGCTAACGGGA
AGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACTAGCGAAGCGAGTGAC
AAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGATCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAAGACTA
CATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGCAAGTTAACTGCAAAATCTAGCGATG
GCTCAATTAAAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGGGGAGCATACAACCAAGGAATG
GGTTATATGCAACCCCAGTACCATAACGGGGATATCTCAAACTAA