Microexon ID Pt_8:2551730-2551735:-
Species Populus   Trichocarpa
Coordinates 8:2551730..2551735
Microexon Cluster ID MEP10
Size 6
Phase 0
Pfam Domain Motif DUF4788
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,6,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TTGGAG
Microexon Amino Acid seq LE
Microexon-tag DNA Seq TTTGAGGATTATATTGAGCCACTTAAGGTGTACCTGGCTAGGTACCGGGAGTTGGAGGGTGATGCAAAGGGGTCTGCTAGAGGTGGAGATGGATCTTCTAAACGGGAT
Microexon-tag Amino Acid Seq FEDYIEPLKVYLARYRELEGDAKGSARGGDGSSKRD
Microexon-tag spanning region2551529-2551916
Microexon-tag prediction score0.968
Overlapped with the annotated transcript (%) 100
New Transcript ID Potri.008G044800.4.v4.1x
Reference Transcript ID Potri.008G044800.4.v4.1
Gene ID Potri.008G044800.v4.1
Gene Name NA
Transcript ID Potri.008G044800.4.v4.1
Protein ID
Gene ID Potri.008G044800.v4.1
Gene Name
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >Potri.008G044800.4.v4.1
MADNPTSPAAGSHESGGEQSPRSGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQK
EKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDAKGSARGGDGSSKRDAVGGLPGQNAQFAFQGSMNYTSPQV
QGQHMILPSMPGNE*
CDS seq >Potri.008G044800.4.v4.1
ATGGCCGATAATCCGACCAGTCCGGCGGCGGGGAGCCACGAGAGTGGTGGTGAGCAGAGCCCGCGGTCAGGGGTGAGAGA
GCAGGATAGATACCTGCCTATTGCTAATATAAGTAGGATCATGAAGAAGGCGTTGCCGGCTAATGGAAAAATTGCTAAGG
ATGCTAAGGATACTGTTCAGGAATGTGTTTCTGAGTTCATTAGCTTTGTTACCAGCGAGGCGAGTGATAAGTGTCAGAAG
GAGAAGAGGAAGACGATCAATGGGGATGATTTGTTGTGGGCAATGGCAACGTTAGGATTTGAGGATTATATTGAGCCACT
TAAGGTGTACCTGGCTAGGTACCGGGAGTTGGAGGGTGATGCAAAGGGGTCTGCTAGAGGTGGAGATGGATCTTCTAAAC
GGGATGCAGTTGGAGGTCTGCCTGGTCAAAATGCACAGTTTGCTTTTCAAGGATCGATGAACTATACGAGTCCACAAGTG
CAGGGACAGCATATGATCCTTCCTTCCATGCCAGGCAACGAGTAG
Pt_8:2551730-2551735:- does not have available information here.