Microexon ID Pp_3:9633512-9633517:+
Species Physcomitrium patens
Coordinates 3:9633512..9633517
Microexon Cluster ID MEP10
Size 6
Phase 0
Pfam Domain Motif DUF4788
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,6,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Pp_3:9633512-9633517:+ does not have available information here.
Transcript ID Pp3c3_13480V3.1
Protein ID Pp3c3_13480V3.1
Gene ID Pp3c3_13480
Gene Name NA
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >Pp3c3_13480V3.1
MAEAGSPGSQDSPHSDEYGGNHGGGDRDNSSVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSD
LLSFMWSHVYDAISPFEWHLVLLPPFLGRFTELEGDTMVRKHAMNRASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPL
KVYLHKYREIEGALTNKAGESSSGKKEGSNIVSPGVQMVQQGGYNPYMQAQMMTSGNYQVQHY*
CDS seq >Pp3c3_13480V3.1
ATGGCGGAGGCTGGAAGTCCTGGTAGTCAAGATAGTCCGCACTCGGATGAATACGGGGGTAACCATGGGGGCGGTGATAG
GGACAACTCTAGTGTTCGTGAGCAGGATCGTTTTCTTCCAATTGCCAACATTAGCCGCATCATGAAGAAGGCGTTGCCTG
CTAATGCTAAGATTGCCAAAGATGCGAAGGAGACTGTTCAGGAGTGTGTTTCAGAATTCATCAGTTTCATCACTAGCGAT
TTGCTATCATTCATGTGGAGCCATGTTTATGATGCGATTTCTCCTTTTGAATGGCATTTAGTTCTACTTCCTCCTTTCTT
AGGACGTTTTACAGAGTTGGAAGGCGATACAATGGTACGCAAGCATGCAATGAACAGAGCTAGCGACAAATGTCAGCGCG
AAAAGAGAAAGACAATAAATGGAGACGATTTACTGTGGGCTATGAGCACATTAGGGTTCGAAGACTACGTCGAACCGCTA
AAAGTTTATCTTCATAAGTATAGAGAGATTGAGGGTGCTTTGACAAACAAGGCTGGAGAATCATCCTCTGGCAAGAAGGA
GGGAAGTAACATTGTGTCTCCTGGTGTGCAAATGGTACAGCAAGGAGGTTACAACCCCTACATGCAAGCGCAGATGATGA
CTTCTGGCAATTACCAGGTACAGCATTATTAG
Microexon DNA seq ATTGAG
Microexon Amino Acid seq IE
Microexon-tag DNA Seq TTCGAAGACTACGTCGAACCGCTAAAAGTTTATCTTCATAAGTATAGAGAGATTGAGGGTGCTTTGACAAACAAGGCTGGAGAATCATCCTCTGGCAAGAAGGAGGGA
Microexon-tag Amino Acid seq FEDYVEPLKVYLHKYREIEGALTNKAGESSSGKKEG
Transcript ID Pp.18171.1
Gene ID Pp.18171
Gene Name NA
Pfam domain motif IL12
Motif E-value 0.15
Motif start 57
Motif end 132
Protein seq >Pp.18171.1
MAEAGSPGSQDSPHSDEYGGNHGGGDRDNSSVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSE
ASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYREIEGALTNKAGESSSGKKEGSNIVSPGVQMVQQGGYNP
YMQAQMMTSGNYQVQHY*
CDS seq >Pp.18171.1
ATGGCGGAGGCTGGAAGTCCTGGTAGTCAAGATAGTCCGCACTCGGATGAATACGGGGGTAACCATGGGGGCGGTGATAG
GGACAACTCTAGTGTTCGTGAGCAGGATCGTTTTCTTCCAATTGCCAACATTAGCCGCATCATGAAGAAGGCGTTGCCTG
CTAATGCTAAGATTGCCAAAGATGCGAAGGAGACTGTTCAGGAGTGTGTTTCAGAATTCATCAGTTTCATCACTAGCGAA
GCTAGCGACAAATGTCAGCGCGAAAAGAGAAAGACAATAAATGGAGACGATTTACTGTGGGCTATGAGCACATTAGGGTT
CGAAGACTACGTCGAACCGCTAAAAGTTTATCTTCATAAGTATAGAGAGATTGAGGGTGCTTTGACAAACAAGGCTGGAG
AATCATCCTCTGGCAAGAAGGAGGGAAGTAACATTGTGTCTCCTGGTGTGCAAATGGTACAGCAAGGAGGTTACAACCCC
TACATGCAAGCGCAGATGATGACTTCTGGCAATTACCAGGTACAGCATTATTAG