Microexon ID At_2:16240045-16240050:+
Species Arabidopsis thaliana
Coordinates 2:16240045..16240050
Microexon Cluster ID MEP10
Size 6
Phase 0
Pfam Domain Motif DUF4788
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,6,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TTGGAG
Microexon Amino Acid seq LE
Microexon-tag DNA Seq TTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAGGTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCT
Microexon-tag Amino Acid Seq FEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDA
Microexon-tag spanning region16239660-16240189
Microexon-tag prediction score0.9336
Overlapped with the annotated transcript (%) 100
New Transcript ID AT2G38880.1x
Reference Transcript ID AT2G38880.1
Gene ID AT2G38880
Gene Name NF-YB1
Transcript ID AT2G38880.1
Protein ID AT2G38880.1
Gene ID AT2G38880
Gene Name NF-YB1
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >AT2G38880.1
MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTV
NGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDAGGGVSGEEMPSW*
CDS seq >AT2G38880.1
ATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAGGGAGCAGGATCGATACCTTCC
TATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTC
AGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGTG
AATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAG
GTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTGGTGGCGGTGTTT
CTGGTGAAGAAATGCCGAGCTGGTAA
Microexon DNA seq TTGGAG
Microexon Amino Acid seq LE
Microexon-tag DNA Seq TTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAGGTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCT
Microexon-tag Amino Acid seq FEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDA
Transcript ID AT2G38880.3
Gene ID At.10801
Gene Name NF-YB1
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >AT2G38880.3
MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTV
NGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDAGGGVSGEEMPV*
CDS seq >AT2G38880.3
ATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAGGGAGCAGGATCGATACCTTCC
TATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTC
AGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGTG
AATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAG
GTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTGGTGGCGGTGTTT
CTGGTGAAGAAATGCCGGTATGA