
Microexon ID | At_2:16240045-16240050:+ |
Species | Arabidopsis thaliana | Coordinates | 2:16240045..16240050 |
Microexon Cluster ID | MEP10 |
Size | 6 |
Phase | 0 |
Pfam Domain Motif | DUF4788 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,6,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTTGARGAYTAYATYGADCCMCTYAAGRTKTACCTGRMTAGRTACAGAGAGWTGGAGGGTGAYACYAAGGGATCTGCWARRGSTGGWGATGSATCTGCTAARARRGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTGGAG |
Microexon Amino Acid seq | LE |
Microexon-tag DNA Seq | TTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAGGTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCT |
Microexon-tag Amino Acid Seq | FEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDA |
Microexon-tag spanning region | 16239660-16240189 |
Microexon-tag prediction score | 0.9336 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT2G38880.1x |
Reference Transcript ID | AT2G38880.1 |
Gene ID | AT2G38880 |
Gene Name | NF-YB1 |
Transcript ID | AT2G38880.1 |
Protein ID | AT2G38880.1 |
Gene ID | AT2G38880 |
Gene Name | NF-YB1 |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >AT2G38880.1 MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTV NGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDAGGGVSGEEMPSW* |
CDS seq | >AT2G38880.1 ATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAGGGAGCAGGATCGATACCTTCC TATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTC AGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGTG AATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAG GTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTGGTGGCGGTGTTT CTGGTGAAGAAATGCCGAGCTGGTAA |
Microexon DNA seq | TTGGAG |
Microexon Amino Acid seq | LE |
Microexon-tag DNA Seq | TTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAGGTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCT |
Microexon-tag Amino Acid seq | FEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDA |
Transcript ID | AT2G38880.3 |
Gene ID | At.10801 |
Gene Name | NF-YB1 |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >AT2G38880.3 MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTV NGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDAGGGVSGEEMPV* |
CDS seq | >AT2G38880.3 ATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAGGGAGCAGGATCGATACCTTCC TATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTC AGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGTG AATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAG GTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTGGTGGCGGTGTTT CTGGTGAAGAAATGCCGGTATGA |