Microexon ID Sm_GL377582:2019597-2019601:-
Species Selaginella moellendorffii
Coordinates GL377582:2019597..2019601
Microexon Cluster ID MEP06
Size 5
Phase 0
Pfam Domain Motif Ribul_P_3_epim
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,5,52
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GATGG
Microexon Amino Acid seq DG
Microexon-tag DNA Seq GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGA
Microexon-tag Amino Acid Seq AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR
Microexon-tag spanning region2019498-2019704
Microexon-tag prediction score0.9443
Overlapped with the annotated transcript (%) 100
New Transcript ID EFJ27520x
Reference Transcript ID EFJ27520
Gene ID SELMODRAFT_231837
Gene Name NA
Transcript ID EFJ27520
Protein ID EFJ27520
Gene ID SELMODRAFT_231837
Gene Name NA
Pfam domain motif Ribul_P_3_epim
Motif E-value 2.2e-71
Motif start 4
Motif end 200
Protein seq >EFJ27520
MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRRHTSAYLDCHLMVTNPLDYVEPLA
KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFIPETMSKVK
ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH*
CDS seq >EFJ27520
ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG
CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT
CGCTGAGAAGGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC
AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCTAAGAAGGTCAAGGA
AAGCGGCATGAGAGTTGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG
TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATCCCGGAGACAATGAGCAAGGTGAAA
GCTCTCCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA
TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA
ACAGCGTCCAAACTGCACAAGCAGCTCACTAA
Microexon DNA seq GATGG
Microexon Amino Acid seq DG
Microexon-tag DNA Seq GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGA
Microexon-tag Amino Acid seq AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR
Transcript ID Sm.10887.1
Gene ID Sm.10887
Gene Name NA
Pfam domain motif Ribul_P_3_epim
Motif E-value 2.3e-71
Motif start 4
Motif end 200
Protein seq >Sm.10887.1
MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRRHTSAYLDCHLMVTNPLDYVEPLA
KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFIPETMSKVK
ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH*
CDS seq >Sm.10887.1
ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG
CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT
CGCTGAGAAGGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC
AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCTAAGAAGGTCAAGGA
AAGCGGCATGAGAGTTGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG
TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATCCCGGAGACAATGAGCAAGGTGAAA
GCTCTCCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA
TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA
ACAGCGTCCAAACTGCACAAGCAGCTCACTAA