
Microexon ID | Sm_GL377582:2019597-2019601:- |
Species | Selaginella moellendorffii | Coordinates | GL377582:2019597..2019601 |
Microexon Cluster ID | MEP06 |
Size | 5 |
Phase | 0 |
Pfam Domain Motif | Ribul_P_3_epim |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,5,52 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGA |
Microexon-tag Amino Acid Seq | AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR |
Microexon-tag spanning region | 2019498-2019704 |
Microexon-tag prediction score | 0.9443 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | EFJ27520x |
Reference Transcript ID | EFJ27520 |
Gene ID | SELMODRAFT_231837 |
Gene Name | NA |
Transcript ID | EFJ27520 |
Protein ID | EFJ27520 |
Gene ID | SELMODRAFT_231837 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 2.2e-71 |
Motif start | 4 |
Motif end | 200 |
Protein seq | >EFJ27520 MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRRHTSAYLDCHLMVTNPLDYVEPLA KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFIPETMSKVK ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH* |
CDS seq | >EFJ27520 ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT CGCTGAGAAGGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCTAAGAAGGTCAAGGA AAGCGGCATGAGAGTTGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATCCCGGAGACAATGAGCAAGGTGAAA GCTCTCCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA ACAGCGTCCAAACTGCACAAGCAGCTCACTAA |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGA |
Microexon-tag Amino Acid seq | AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR |
Transcript ID | Sm.10887.1 |
Gene ID | Sm.10887 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 2.3e-71 |
Motif start | 4 |
Motif end | 200 |
Protein seq | >Sm.10887.1 MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRRHTSAYLDCHLMVTNPLDYVEPLA KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFIPETMSKVK ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH* |
CDS seq | >Sm.10887.1 ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT CGCTGAGAAGGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCTAAGAAGGTCAAGGA AAGCGGCATGAGAGTTGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATCCCGGAGACAATGAGCAAGGTGAAA GCTCTCCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA ACAGCGTCCAAACTGCACAAGCAGCTCACTAA |