
Microexon ID | Sm_GL377568:3455522-3455526:- |
Species | Selaginella moellendorffii | Coordinates | GL377568:3455522..3455526 |
Microexon Cluster ID | MEP06 |
Size | 5 |
Phase | 0 |
Pfam Domain Motif | Ribul_P_3_epim |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,5,52 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGG |
Microexon-tag Amino Acid Seq | AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR |
Microexon-tag spanning region | 3455423-3455642 |
Microexon-tag prediction score | 0.9432 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | EFJ35691x |
Reference Transcript ID | EFJ35691 |
Gene ID | SELMODRAFT_166200 |
Gene Name | NA |
Transcript ID | EFJ35691 |
Protein ID | EFJ35691 |
Gene ID | SELMODRAFT_166200 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 3.1e-71 |
Motif start | 4 |
Motif end | 200 |
Protein seq | >EFJ35691 MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTSAYLDCHLMVTNPLDYVEPLA KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFMPETMSKVK ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH* |
CDS seq | >EFJ35691 ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT CGCTGAGGAAGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCGAAGAAGGTCAAGGA AAGCGGCATGAGAGTCGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATGCCGGAGACAATGAGCAAGGTGAAA GCTCTTCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA ACAGCGTCCAAACTGCACAAGCAGCTCACTAA |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGG |
Microexon-tag Amino Acid seq | AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR |
Transcript ID | Sm.3393.1 |
Gene ID | Sm.3393 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 3.2e-71 |
Motif start | 4 |
Motif end | 200 |
Protein seq | >Sm.3393.1 MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTSAYLDCHLMVTNPLDYVEPLA KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFMPETMSKVK ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH* |
CDS seq | >Sm.3393.1 ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT CGCTGAGGAAGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCGAAGAAGGTCAAGGA AAGCGGCATGAGAGTCGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATGCCGGAGACAATGAGCAAGGTGAAA GCTCTTCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA ACAGCGTCCAAACTGCACAAGCAGCTCACTAA |