Microexon ID Sm_GL377568:3455522-3455526:-
Species Selaginella moellendorffii
Coordinates GL377568:3455522..3455526
Microexon Cluster ID MEP06
Size 5
Phase 0
Pfam Domain Motif Ribul_P_3_epim
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,5,52
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GATGG
Microexon Amino Acid seq DG
Microexon-tag DNA Seq GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGG
Microexon-tag Amino Acid Seq AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR
Microexon-tag spanning region3455423-3455642
Microexon-tag prediction score0.9432
Overlapped with the annotated transcript (%) 100
New Transcript ID EFJ35691x
Reference Transcript ID EFJ35691
Gene ID SELMODRAFT_166200
Gene Name NA
Transcript ID EFJ35691
Protein ID EFJ35691
Gene ID SELMODRAFT_166200
Gene Name NA
Pfam domain motif Ribul_P_3_epim
Motif E-value 3.1e-71
Motif start 4
Motif end 200
Protein seq >EFJ35691
MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTSAYLDCHLMVTNPLDYVEPLA
KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFMPETMSKVK
ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH*
CDS seq >EFJ35691
ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG
CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT
CGCTGAGGAAGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC
AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCGAAGAAGGTCAAGGA
AAGCGGCATGAGAGTCGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG
TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATGCCGGAGACAATGAGCAAGGTGAAA
GCTCTTCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA
TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA
ACAGCGTCCAAACTGCACAAGCAGCTCACTAA
Microexon DNA seq GATGG
Microexon Amino Acid seq DG
Microexon-tag DNA Seq GCGCAGCGCATGCTGGATTGCGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAATCGCTGAGG
Microexon-tag Amino Acid seq AQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLR
Transcript ID Sm.3393.1
Gene ID Sm.3393
Gene Name NA
Pfam domain motif Ribul_P_3_epim
Motif E-value 3.2e-71
Motif start 4
Motif end 200
Protein seq >Sm.3393.1
MSAKIAPSMLSSDFANLAAEAQRMLDCGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTSAYLDCHLMVTNPLDYVEPLA
KAGASGFTFHIEASRDNWDRVSKKVKESGMRVGVCLKPGTPVEEVFPLVDSGDVDLVLIMTVEPGFGGQKFMPETMSKVK
ALRSRYPSLDIEVDGGLGPSTIQQAADAGANCIVAGSSVFGAPDPAAVISLMRNSVQTAQAAH*
CDS seq >Sm.3393.1
ATGAGCGCCAAGATCGCGCCTTCGATGCTCTCCTCCGACTTCGCCAATCTCGCAGCTGAGGCGCAGCGCATGCTGGATTG
CGGCGCGGATTGGCTACACATGGACATTATGGATGGGCATTTTGTTCCAAATTTGACGATTGGAGCTCCGGTGATCCAAT
CGCTGAGGAAGCACACGAGTGCGTACTTGGATTGCCATCTCATGGTCACGAATCCACTCGACTATGTGGAGCCTCTGGCC
AAGGCCGGAGCGTCAGGCTTTACTTTCCACATTGAAGCTTCTCGAGACAACTGGGACCGAGTGTCGAAGAAGGTCAAGGA
AAGCGGCATGAGAGTCGGAGTTTGCCTCAAGCCGGGAACTCCCGTGGAGGAAGTTTTTCCTCTGGTGGATAGCGGGGATG
TTGATCTGGTGCTGATCATGACGGTGGAGCCGGGCTTTGGAGGTCAAAAGTTCATGCCGGAGACAATGAGCAAGGTGAAA
GCTCTTCGATCTCGATATCCTTCACTAGACATCGAGGTTGATGGTGGTCTCGGCCCTTCGACGATCCAGCAAGCTGCCGA
TGCCGGAGCCAACTGTATTGTCGCTGGGAGCTCAGTTTTTGGAGCTCCCGATCCAGCTGCTGTCATCAGCTTGATGCGAA
ACAGCGTCCAAACTGCACAAGCAGCTCACTAA