
Microexon ID | Pp_18:9857442-9857446:+ |
Species | Physcomitrium patens | Coordinates | 18:9857442..9857446 |
Microexon Cluster ID | MEP06 |
Size | 5 |
Phase | 0 |
Pfam Domain Motif | Ribul_P_3_epim |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,5,52 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCCAAGTTCATTGAGGAGTGTGGAGCCGACTGGCTTCACATGGATGTTATGGATGGGCACTTTGTTCCCAATTTGACGATTGGCGCTCCGGTCATCAAGTCCTTGAGA |
Microexon-tag Amino Acid Seq | AKFIEECGADWLHMDVMDGHFVPNLTIGAPVIKSLR |
Microexon-tag spanning region | 9856766-9857699 |
Microexon-tag prediction score | 0.9132 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c18_13640V3.1x |
Reference Transcript ID | Pp3c18_13640V3.1 |
Gene ID | Pp3c18_13640 |
Gene Name | NA |
Transcript ID | Pp3c18_13640V3.1 |
Protein ID | Pp3c18_13640V3.1 |
Gene ID | Pp3c18_13640 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 1.3e-72 |
Motif start | 13 |
Motif end | 210 |
Protein seq | >Pp3c18_13640V3.1 MAQNLEVKVPRAKIAPSMLSSDFSNLASEAKFIEECGADWLHMDVMDGHFVPNLTIGAPVIKSLRKHTKMYMDCHLMVTN PMDYVDEFVKAGASGFTFHVEVAKDNWQELIHKIKAGGMRAGVALRPGTPVEEVFPLVESQEPVDMVLVMTVEPGFGGQS FMPETMPKVNALRRKFPLLDIEVDGGLAPATIKQAAEAGANCIVAGSAVFGAKDPAEVIATLRQGVDAAQTSSIFFK* |
CDS seq | >Pp3c18_13640V3.1 ATGGCTCAGAATCTAGAGGTAAAGGTGCCGAGAGCAAAAATTGCTCCCTCCATGCTCTCCTCCGACTTTTCCAATCTGGC GTCAGAAGCCAAGTTCATTGAGGAGTGTGGAGCCGACTGGCTTCACATGGATGTTATGGATGGGCACTTTGTTCCCAATT TGACGATTGGCGCTCCGGTCATCAAGTCCTTGAGAAAGCATACCAAAATGTACATGGACTGTCATTTGATGGTCACCAAC CCAATGGACTACGTGGATGAATTTGTGAAGGCCGGCGCTTCAGGCTTCACTTTTCATGTTGAAGTTGCAAAAGACAACTG GCAGGAACTAATCCACAAAATCAAGGCTGGTGGTATGCGCGCGGGAGTTGCTTTGAGGCCTGGAACTCCTGTTGAAGAAG TTTTTCCTCTGGTTGAGAGTCAAGAACCAGTGGACATGGTGCTTGTCATGACAGTTGAACCTGGCTTTGGGGGCCAGAGC TTTATGCCTGAGACGATGCCGAAGGTGAATGCTTTGCGACGGAAGTTTCCGCTCCTTGATATTGAGGTGGATGGTGGCTT GGCTCCAGCTACCATCAAGCAGGCAGCAGAGGCTGGAGCTAATTGTATTGTAGCAGGGAGCGCTGTCTTTGGGGCTAAGG ATCCTGCTGAAGTAATCGCTACTCTCCGGCAAGGAGTTGACGCAGCTCAAACTTCTTCGATCTTCTTCAAGTGA |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCCAAGTTCATTGAGGAGTGTGGAGCCGACTGGCTTCACATGGATGTTATGGATGGGCACTTTGTTCCCAATTTGACGATTGGCGCTCCGGTCATCAAGTCCTTGAGA |
Microexon-tag Amino Acid seq | AKFIEECGADWLHMDVMDGHFVPNLTIGAPVIKSLR |
Transcript ID | Pp3c18_13640V3.2 |
Gene ID | Pp.9641 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 1.3e-72 |
Motif start | 13 |
Motif end | 210 |
Protein seq | >Pp3c18_13640V3.2 MAQNLEVKVPRAKIAPSMLSSDFSNLASEAKFIEECGADWLHMDVMDGHFVPNLTIGAPVIKSLRKHTKMYMDCHLMVTN PMDYVDEFVKAGASGFTFHVEVAKDNWQELIHKIKAGGMRAGVALRPGTPVEEVFPLVESQEPVDMVLVMTVEPGFGGQS FMPETMPKVNALRRKFPLLDIEVDGGLAPATIKQAAEAGANCIVAGSAVFGAKDPAEVIATLRQGVDAAQTSSIFFK* |
CDS seq | >Pp3c18_13640V3.2 ATGGCTCAGAATCTAGAGGTAAAGGTGCCGAGAGCAAAAATTGCTCCCTCCATGCTCTCCTCCGACTTTTCCAATCTGGC GTCAGAAGCCAAGTTCATTGAGGAGTGTGGAGCCGACTGGCTTCACATGGATGTTATGGATGGGCACTTTGTTCCCAATT TGACGATTGGCGCTCCGGTCATCAAGTCCTTGAGAAAGCATACCAAAATGTACATGGACTGTCATTTGATGGTCACCAAC CCAATGGACTACGTGGATGAATTTGTGAAGGCCGGCGCTTCAGGCTTCACTTTTCATGTTGAAGTTGCAAAAGACAACTG GCAGGAACTAATCCACAAAATCAAGGCTGGTGGTATGCGCGCGGGAGTTGCTTTGAGGCCTGGAACTCCTGTTGAAGAAG TTTTTCCTCTGGTTGAGAGTCAAGAACCAGTGGACATGGTGCTTGTCATGACAGTTGAACCTGGCTTTGGGGGCCAGAGC TTTATGCCTGAGACGATGCCGAAGGTGAATGCTTTGCGACGGAAGTTTCCGCTCCTTGATATTGAGGTGGATGGTGGCTT GGCTCCAGCTACCATCAAGCAGGCAGCAGAGGCTGGAGCTAATTGTATTGTAGCAGGGAGCGCTGTCTTTGGGGCTAAGG ATCCTGCTGAAGTAATCGCTACTCTCCGGCAAGGAGTTGACGCAGCTCAAACTTCTTCGATCTTCTTCAAGTGA |