
Microexon ID | Ha_6:53799251-53799255:- |
Species | Helianthus annuus | Coordinates | 6:53799251..53799255 |
Microexon Cluster ID | MEP06 |
Size | 5 |
Phase | 0 |
Pfam Domain Motif | Ribul_P_3_epim |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,5,52 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGACATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGA |
Microexon-tag Amino Acid Seq | AERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLR |
Microexon-tag spanning region | 53799121-53799404 |
Microexon-tag prediction score | 0.9732 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | OTG23145x |
Reference Transcript ID | OTG23145 |
Gene ID | HannXRQ_Chr06g0179181 |
Gene Name | NA |
Transcript ID | OTG23145 |
Protein ID | OTG23145 |
Gene ID | HannXRQ_Chr06g0179181 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 5.2e-15 |
Motif start | 1 |
Motif end | 53 |
Protein seq | >OTG23145 MLSSDFANIAFEAERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLRKHTKECMGRFCLKTITVTHMLVNG* |
CDS seq | >OTG23145 ATGCTATCATCAGACTTCGCTAATATTGCATTCGAGGCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGA CATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGAAAGCACACAAAGGAGT GCATGGGTCGGTTTTGCCTCAAAACCATAACCGTAACCCATATGTTGGTTAATGGATAA |
Microexon DNA seq | GATGG |
Microexon Amino Acid seq | DG |
Microexon-tag DNA Seq | GCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGACATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGA |
Microexon-tag Amino Acid seq | AERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLR |
Transcript ID | Ha.48496.4 |
Gene ID | Ha.48496 |
Gene Name | NA |
Pfam domain motif | Ribul_P_3_epim |
Motif E-value | 5.4e-15 |
Motif start | 1 |
Motif end | 53 |
Protein seq | >Ha.48496.4 MLSSDFANIAFEAERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLRKHTKECMGRFCLKTITVTHMLVNG* |
CDS seq | >Ha.48496.4 ATGCTATCATCAGACTTCGCTAATATTGCATTCGAGGCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGA CATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGAAAGCACACAAAGGAGT GCATGGGTCGGTTTTGCCTCAAAACCATAACCGTAACCCATATGTTGGTTAATGGATAA |