Microexon ID Ha_6:53799251-53799255:-
Species Helianthus annuus
Coordinates 6:53799251..53799255
Microexon Cluster ID MEP06
Size 5
Phase 0
Pfam Domain Motif Ribul_P_3_epim
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 51,5,52
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq GCYSAGCGCATGSTCMRYTKYGGYGCYGAYTGGCTYCACATGGACATCATGGATGGGCAYTTTGTYCCWAAYYTWACWATTGGTGCTCCAGTYATYGAGAGTTTGAGR
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GATGG
Microexon Amino Acid seq DG
Microexon-tag DNA Seq GCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGACATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGA
Microexon-tag Amino Acid Seq AERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLR
Microexon-tag spanning region53799121-53799404
Microexon-tag prediction score0.9732
Overlapped with the annotated transcript (%) 100
New Transcript ID OTG23145x
Reference Transcript ID OTG23145
Gene ID HannXRQ_Chr06g0179181
Gene Name NA
Transcript ID OTG23145
Protein ID OTG23145
Gene ID HannXRQ_Chr06g0179181
Gene Name NA
Pfam domain motif Ribul_P_3_epim
Motif E-value 5.2e-15
Motif start 1
Motif end 53
Protein seq >OTG23145
MLSSDFANIAFEAERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLRKHTKECMGRFCLKTITVTHMLVNG*
CDS seq >OTG23145
ATGCTATCATCAGACTTCGCTAATATTGCATTCGAGGCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGA
CATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGAAAGCACACAAAGGAGT
GCATGGGTCGGTTTTGCCTCAAAACCATAACCGTAACCCATATGTTGGTTAATGGATAA
Microexon DNA seq GATGG
Microexon Amino Acid seq DG
Microexon-tag DNA Seq GCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGACATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGA
Microexon-tag Amino Acid seq AERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLR
Transcript ID Ha.48496.4
Gene ID Ha.48496
Gene Name NA
Pfam domain motif Ribul_P_3_epim
Motif E-value 5.4e-15
Motif start 1
Motif end 53
Protein seq >Ha.48496.4
MLSSDFANIAFEAERMVNFGADWLHMDIMDGHIVPNLTIGAPVIESLRKHTKECMGRFCLKTITVTHMLVNG*
CDS seq >Ha.48496.4
ATGCTATCATCAGACTTCGCTAATATTGCATTCGAGGCTGAGCGAATGGTCAACTTCGGTGCTGACTGGCTTCACATGGA
CATCATGGATGGCCATATTGTCCCAAATCTAACTATTGGTGCTCCAGTTATTGAGAGTTTGAGAAAGCACACAAAGGAGT
GCATGGGTCGGTTTTGCCTCAAAACCATAACCGTAACCCATATGTTGGTTAATGGATAA