
Microexon ID | Zm_3:170273227-170273230:+ |
Species | Zea mays | Coordinates | 3:170273227..170273230 |
Microexon Cluster ID | MEP04 |
Size | 4 |
Phase | 0 |
Pfam Domain Motif | Ribonuclease_T2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,4,53 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RGYWMWYCATCAACHTGCYWYRGTGGAAARGGAYYATTYTGGGCTCATGAGTGGGARAARCATGGRACWTGYTCYTCYCCWGTWRTTCRWGATGAATAYARYTAYTTY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Zm_3:170273227-170273230:+ does not have available information here.
Zm_3:170273227-170273230:+ does not have available information here.
Microexon DNA seq | TGGG |
Microexon Amino Acid seq | WE |
Microexon-tag DNA Seq | TCCAAATCTGGAACATGCTTCAGCGGCAAGGGACTCTTCTGGGCTCACGAGTGGGAGAAACATGGAACCTGCTCTGCCCCTGTGGTTCAGGATGAATTACAGTATTTC |
Microexon-tag Amino Acid seq | SKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYF |
Transcript ID | Zm.15600.1 |
Gene ID | Zm.15600 |
Gene Name | NA |
Pfam domain motif | Ribonuclease_T2 |
Motif E-value | 6.1e-46 |
Motif start | 39 |
Motif end | 225 |
Protein seq | >Zm.15600.1 MTMATKAACVLAVWVLVASGLSDLGSARAPLGSKPQREFDYFALSLQWPGTICASTRHCCATNGCCRSEPLQTFTIHGLW PDYDDGTWPSCCRRTQFEMDKILPLKEVLDKYWPSLYCSKSGTCFSGKGLFWAHEWEKHGTCSAPVVQDELQYFTLALDL YFKYNVTEMLSSGWIQVSNGKEYALSDVIDTIKHAFGGSPQIVCKRGSIEELRLCFDKELKPRDCLTTSLANGSVSKSKH CPRYITLPTYDPLVLANSTVEIMTQFDEFEVPAALYTA* |
CDS seq | >Zm.15600.1 ATGACGATGGCGACGAAGGCGGCGTGCGTGCTGGCGGTGTGGGTGCTCGTCGCATCGGGCCTGTCCGACCTGGGCTCAGC GCGCGCGCCCCTGGGCAGCAAGCCGCAGCGGGAGTTCGACTACTTCGCGCTCTCCCTCCAGTGGCCCGGCACCATCTGCG CCTCCACCCGCCACTGCTGCGCCACCAACGGCTGCTGCCGCTCGGAGCCTCTCCAGACGTTCACGATCCACGGGCTATGG CCGGACTACGACGACGGGACCTGGCCGTCGTGCTGCCGCCGCACCCAATTCGAGATGGACAAGATATTGCCACTGAAGGA GGTGCTTGACAAGTACTGGCCGTCCCTCTACTGCTCCAAATCTGGAACATGCTTCAGCGGCAAGGGACTCTTCTGGGCTC ACGAGTGGGAGAAACATGGAACCTGCTCTGCCCCTGTGGTTCAGGATGAATTACAGTATTTCACCCTTGCCCTTGACCTC TACTTCAAGTATAACGTTACGGAAATGCTGTCAAGTGGATGGATACAGGTTTCAAATGGTAAGGAATATGCACTGAGCGA TGTCATCGATACCATCAAACATGCTTTTGGGGGATCACCACAAATTGTTTGCAAGAGGGGTTCAATCGAAGAACTTAGGT TATGCTTCGACAAAGAATTGAAGCCTCGTGATTGCCTTACCACTTCTTTGGCGAATGGAAGTGTATCAAAAAGCAAGCAC TGCCCGCGGTACATCACCTTGCCAACGTATGATCCCCTTGTGCTTGCCAATTCAACTGTAGAGATCATGACACAGTTCGA TGAATTTGAGGTGCCTGCAGCTCTTTATACAGCCTAA |