
Microexon ID | At_2:16592241-16592244:+ |
Species | Arabidopsis thaliana | Coordinates | 2:16592241..16592244 |
Microexon Cluster ID | MEP04 |
Size | 4 |
Phase | 0 |
Pfam Domain Motif | Ribonuclease_T2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 51,4,53 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RGYWMWYCATCAACHTGCYWYRGTGGAAARGGAYYATTYTGGGCTCATGAGTGGGARAARCATGGRACWTGYTCYTCYCCWGTWRTTCRWGATGAATAYARYTAYTTY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TGGG |
Microexon Amino Acid seq | WE |
Microexon-tag DNA Seq | GGTTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACATGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTC |
Microexon-tag Amino Acid Seq | GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYF |
Microexon-tag spanning region | 16592048-16592528 |
Microexon-tag prediction score | 0.9704 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT2G39780.1x |
Reference Transcript ID | AT2G39780.1 |
Gene ID | AT2G39780 |
Gene Name | RNS2 |
Transcript ID | AT2G39780.1 |
Protein ID | AT2G39780.1 |
Gene ID | AT2G39780 |
Gene Name | RNS2 |
Pfam domain motif | Ribonuclease_T2 |
Motif E-value | 1.3e-48 |
Motif start | 32 |
Motif end | 219 |
Protein seq | >AT2G39780.1 MASRLCLLLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDG SWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNV TDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCVGSQDLTSRKSCPKYVSLPEY TPLDGEAMVLKMPTEREAL* |
CDS seq | >AT2G39780.1 ATGGCGTCACGTTTATGTCTTCTCCTTCTCGTTGCGTGTATCGCCGGAGCATTTGCCGGAGACGTCATCGAACTCAATCG ATCTCAGAGGGAGTTCGATTATTTCGCTCTATCTCTTCAATGGCCTGGAACCTATTGCCGTGGAACTCGCCATTGTTGCT CCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTTATGGCCTGACTATAACGATGGT TCGTGGCCTTCATGTTGTTATCGATCTGACTTTAAAGAGAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTG GCCTAGTCTCAGTTGTGGTTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACATG GGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAATCTCTACTTGAAGCATAATGTC ACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAACAGTGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCA GAATGCATTTCATATCACCCCTGAAGTGGTTTGCAAAAGAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGATT TTAAGCCCAGGGACTGTGTTGGTTCACAAGATTTGACATCTAGAAAGTCATGCCCCAAGTACGTAAGTTTGCCGGAATAC ACGCCATTAGATGGTGAAGCTATGGTTCTGAAGATGCCAACAGAAAGAGAAGCTCTTTGA |
Microexon DNA seq | TGGG |
Microexon Amino Acid seq | WE |
Microexon-tag DNA Seq | GGTTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACATGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTC |
Microexon-tag Amino Acid seq | GSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYF |
Transcript ID | AT2G39780.1 |
Gene ID | At.10905 |
Gene Name | RNS2 |
Pfam domain motif | Ribonuclease_T2 |
Motif E-value | 1.4e-48 |
Motif start | 32 |
Motif end | 219 |
Protein seq | >AT2G39780.1 MASRLCLLLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDG SWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNV TDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCVGSQDLTSRKSCPKYVSLPEY TPLDGEAMVLKMPTEREAL* |
CDS seq | >AT2G39780.1 ATGGCGTCACGTTTATGTCTTCTCCTTCTCGTTGCGTGTATCGCCGGAGCATTTGCCGGAGACGTCATCGAACTCAATCG ATCTCAGAGGGAGTTCGATTATTTCGCTCTATCTCTTCAATGGCCTGGAACCTATTGCCGTGGAACTCGCCATTGTTGCT CCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTTATGGCCTGACTATAACGATGGT TCGTGGCCTTCATGTTGTTATCGATCTGACTTTAAAGAGAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTG GCCTAGTCTCAGTTGTGGTTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACATG GGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAATCTCTACTTGAAGCATAATGTC ACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAACAGTGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCA GAATGCATTTCATATCACCCCTGAAGTGGTTTGCAAAAGAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGATT TTAAGCCCAGGGACTGTGTTGGTTCACAAGATTTGACATCTAGAAAGTCATGCCCCAAGTACGTAAGTTTGCCGGAATAC ACGCCATTAGATGGTGAAGCTATGGTTCTGAAGATGCCAACAGAAAGAGAAGCTCTTTGA |