Microexon ID At_5:21002322-21002324:-
Species Arabidopsis thaliana
Coordinates 5:21002322..21002324
Microexon Cluster ID MEP03
Size 3
Phase 0
Pfam Domain Motif CHORD
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 54,3,51
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq GCYAYSTTCACCGARGAYGAYAAYCCYGAMGRYTCCTGYMVWTAYCAYGMYTCKGGACCTWTATTTCATGATGGWATGAAAGARTGGAGYTGYTGCAARMAAAGAAGY
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GGA
Microexon Amino Acid seq G
Microexon-tag DNA Seq GCCATGTTCACCGATGACGACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGT
Microexon-tag Amino Acid Seq AMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRS
Microexon-tag spanning region21002172-21003089
Microexon-tag prediction score0.964
Overlapped with the annotated transcript (%) 100
New Transcript ID AT5G51700.1x
Reference Transcript ID AT5G51700.1
Gene ID AT5G51700
Gene Name RAR1
Transcript ID AT5G51700.1
Protein ID AT5G51700.1
Gene ID AT5G51700
Gene Name RAR1
Pfam domain motif CHORD
Motif E-value 6.2e-23
Motif start 11
Motif end 71
Protein seq >AT5G51700.1
MEVGSATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAK
SVPKHPVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPKEQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCK
NKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSSPDPAV*
CDS seq >AT5G51700.1
ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATGTTCACCGATGACGACAATCC
TCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAA
GTCATGATTTCAGTTTGTTCTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAAA
TCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATG
CCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG
CAGAAGAAGAAAAAATTGAACCCTTAGCGCCTCCAGTACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCAAA
AACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCCATCATCCAGGTCCTGCGGTCTT
CCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTCACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCA
CTAAAGGATGGCATAGCAGCAGCCCTGATCCGGCGGTCTGA
Microexon DNA seq GGA
Microexon Amino Acid seq G
Microexon-tag DNA Seq GCCATGTTCACCGATGACGACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGT
Microexon-tag Amino Acid seq AMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRS
Transcript ID AT5G51700.1
Gene ID At.26278
Gene Name RAR1
Pfam domain motif CHORD
Motif E-value 6.3e-23
Motif start 11
Motif end 71
Protein seq >AT5G51700.1
MEVGSATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAK
SVPKHPVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPKEQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCK
NKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSSPDPAV*
CDS seq >AT5G51700.1
ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATGTTCACCGATGACGACAATCC
TCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAA
GTCATGATTTCAGTTTGTTCTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAAA
TCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATG
CCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG
CAGAAGAAGAAAAAATTGAACCCTTAGCGCCTCCAGTACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCAAA
AACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCCATCATCCAGGTCCTGCGGTCTT
CCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTCACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCA
CTAAAGGATGGCATAGCAGCAGCCCTGATCCGGCGGTCTGA