
Microexon ID | At_5:21002322-21002324:- |
Species | Arabidopsis thaliana | Coordinates | 5:21002322..21002324 |
Microexon Cluster ID | MEP03 |
Size | 3 |
Phase | 0 |
Pfam Domain Motif | CHORD |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 54,3,51 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCYAYSTTCACCGARGAYGAYAAYCCYGAMGRYTCCTGYMVWTAYCAYGMYTCKGGACCTWTATTTCATGATGGWATGAAAGARTGGAGYTGYTGCAARMAAAGAAGY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGA |
Microexon Amino Acid seq | G |
Microexon-tag DNA Seq | GCCATGTTCACCGATGACGACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGT |
Microexon-tag Amino Acid Seq | AMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRS |
Microexon-tag spanning region | 21002172-21003089 |
Microexon-tag prediction score | 0.964 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT5G51700.1x |
Reference Transcript ID | AT5G51700.1 |
Gene ID | AT5G51700 |
Gene Name | RAR1 |
Transcript ID | AT5G51700.1 |
Protein ID | AT5G51700.1 |
Gene ID | AT5G51700 |
Gene Name | RAR1 |
Pfam domain motif | CHORD |
Motif E-value | 6.2e-23 |
Motif start | 11 |
Motif end | 71 |
Protein seq | >AT5G51700.1 MEVGSATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAK SVPKHPVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPKEQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCK NKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSSPDPAV* |
CDS seq | >AT5G51700.1 ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATGTTCACCGATGACGACAATCC TCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAA GTCATGATTTCAGTTTGTTCTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAAA TCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATG CCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG CAGAAGAAGAAAAAATTGAACCCTTAGCGCCTCCAGTACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCAAA AACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCCATCATCCAGGTCCTGCGGTCTT CCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTCACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCA CTAAAGGATGGCATAGCAGCAGCCCTGATCCGGCGGTCTGA |
Microexon DNA seq | GGA |
Microexon Amino Acid seq | G |
Microexon-tag DNA Seq | GCCATGTTCACCGATGACGACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGT |
Microexon-tag Amino Acid seq | AMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRS |
Transcript ID | AT5G51700.1 |
Gene ID | At.26278 |
Gene Name | RAR1 |
Pfam domain motif | CHORD |
Motif E-value | 6.3e-23 |
Motif start | 11 |
Motif end | 71 |
Protein seq | >AT5G51700.1 MEVGSATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAK SVPKHPVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPKEQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCK NKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSSPDPAV* |
CDS seq | >AT5G51700.1 ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATGTTCACCGATGACGACAATCC TCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAA GTCATGATTTCAGTTTGTTCTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAAA TCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATG CCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG CAGAAGAAGAAAAAATTGAACCCTTAGCGCCTCCAGTACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCAAA AACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCCATCATCCAGGTCCTGCGGTCTT CCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTCACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCA CTAAAGGATGGCATAGCAGCAGCCCTGATCCGGCGGTCTGA |