Microexon ID Sm_GL377703:41719:-
Species Selaginella moellendorffii
Coordinates GL377703:41719..41719
Microexon Cluster ID MEP02
Size 1
Phase 1
Pfam Domain Motif Vps55
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 19,1,52
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq ATGGCGATGACMRTYGAAGTGCTTGCTGGRCTTGCTTTYATGTTYTCADCBAGYATYYTGYTRCARATMCTG
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq T
Microexon Amino Acid seq V
Microexon-tag DNA Seq ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTG
Microexon-tag Amino Acid Seq MAMTIEVLAGLAFMFSVGIMMQIL
Microexon-tag spanning region41596-41847
Microexon-tag prediction score0.9387
Overlapped with the annotated transcript (%) 45.83
New Transcript ID EFJ06323x
Reference Transcript ID EFJ06323
Gene ID SELMODRAFT_135685
Gene Name NA
Sm_GL377703:41719:- does not have available information here.
Microexon DNA seq T
Microexon Amino Acid seq V
Microexon-tag DNA Seq ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTG
Microexon-tag Amino Acid seq MAMTIEVLAGLAFMFSVGIMMQIL
Transcript ID Sm.30700.1
Gene ID Sm.30700
Gene Name NA
Pfam domain motif Vps55
Motif E-value 1.9e-34
Motif start 9
Motif end 126
Protein seq >Sm.30700.1
MAMTIEVLAGLAFMFSVGIMMQILACALYSNWWPMLTALMYVMVPMPCLFFGSSSSESLLSVGDATGDWADAAKFLTGFS
TVGSIAIPAILRHAMLIEIGAMFLAYSSFIILTSTVILFQYVTRESEW*
CDS seq >Sm.30700.1
ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTGGCTTGTGC
CTTGTACAGCAATTGGTGGCCAATGCTCACAGCTCTCATGTACGTGATGGTTCCAATGCCTTGCTTGTTCTTCGGAAGCT
CTTCGTCCGAGTCGCTTCTATCTGTCGGCGATGCTACTGGAGACTGGGCTGATGCTGCAAAGTTCCTGACGGGATTTTCA
ACCGTGGGAAGCATTGCGATTCCGGCCATTTTGCGCCATGCGATGTTGATAGAGATCGGCGCCATGTTTCTCGCTTACTC
GTCTTTCATTATTTTGACGAGCACCGTCATCTTGTTCCAATACGTGACGCGCGAGAGCGAGTGGTAG