Microexon ID Sm_GL377574:3068242:+
Species Selaginella moellendorffii
Coordinates GL377574:3068242..3068242
Microexon Cluster ID MEP02
Size 1
Phase 1
Pfam Domain Motif Vps55
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 19,1,52
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq ATGGCGATGACMRTYGAAGTGCTTGCTGGRCTTGCTTTYATGTTYTCADCBAGYATYYTGYTRCARATMCTG
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq T
Microexon Amino Acid seq V
Microexon-tag DNA Seq ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTG
Microexon-tag Amino Acid Seq MAMTIEVLAGLAFMFSVGIMMQIL
Microexon-tag spanning region3068114-3068365
Microexon-tag prediction score0.9387
Overlapped with the annotated transcript (%) 45.83
New Transcript ID EFJ31144x
Reference Transcript ID EFJ31144
Gene ID SELMODRAFT_88464
Gene Name NA
Sm_GL377574:3068242:+ does not have available information here.
Microexon DNA seq T
Microexon Amino Acid seq V
Microexon-tag DNA Seq ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTG
Microexon-tag Amino Acid seq MAMTIEVLAGLAFMFSVGIMMQIL
Transcript ID Sm.7548.1
Gene ID Sm.7548
Gene Name NA
Pfam domain motif Vps55
Motif E-value 1.9e-34
Motif start 9
Motif end 126
Protein seq >Sm.7548.1
MAMTIEVLAGLAFMFSVGIMMQILACALYSNWWPMLTALMYVMVPMPCLFFGSSSSESLLSVGDATGDWADAAKFLTGFS
TVGSIAIPAILRHAMLIEIGAMFLAYSSFIILTSTVILFQYVTRESEW*
CDS seq >Sm.7548.1
ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTGGCTTGTGC
CTTGTACAGCAATTGGTGGCCAATGCTCACAGCTCTCATGTACGTGATGGTTCCAATGCCTTGCTTGTTCTTCGGAAGCT
CTTCGTCCGAGTCGCTTCTATCTGTCGGCGATGCTACTGGAGACTGGGCTGATGCTGCAAAGTTCCTGACGGGATTTTCA
ACCGTGGGAAGCATTGCGATTCCGGCCATTTTGCGCCATGCGATGTTGATAGAGATCGGCGCCATGTTTCTCGCTTACTC
GTCTTTCATTATTTTGACGAGCACCGTCATCTTGTTCCAATACGTGACTCGCGAGAGCGAGTGGTAG