
Microexon ID | Sm_GL377574:3068242:+ |
Species | Selaginella moellendorffii | Coordinates | GL377574:3068242..3068242 |
Microexon Cluster ID | MEP02 |
Size | 1 |
Phase | 1 |
Pfam Domain Motif | Vps55 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 19,1,52 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATGGCGATGACMRTYGAAGTGCTTGCTGGRCTTGCTTTYATGTTYTCADCBAGYATYYTGYTRCARATMCTG |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | T |
Microexon Amino Acid seq | V |
Microexon-tag DNA Seq | ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTG |
Microexon-tag Amino Acid Seq | MAMTIEVLAGLAFMFSVGIMMQIL |
Microexon-tag spanning region | 3068114-3068365 |
Microexon-tag prediction score | 0.9387 |
Overlapped with the annotated transcript (%) | 45.83 |
New Transcript ID | EFJ31144x |
Reference Transcript ID | EFJ31144 |
Gene ID | SELMODRAFT_88464 |
Gene Name | NA |
Sm_GL377574:3068242:+ does not have available information here.
Microexon DNA seq | T |
Microexon Amino Acid seq | V |
Microexon-tag DNA Seq | ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTG |
Microexon-tag Amino Acid seq | MAMTIEVLAGLAFMFSVGIMMQIL |
Transcript ID | Sm.7548.1 |
Gene ID | Sm.7548 |
Gene Name | NA |
Pfam domain motif | Vps55 |
Motif E-value | 1.9e-34 |
Motif start | 9 |
Motif end | 126 |
Protein seq | >Sm.7548.1 MAMTIEVLAGLAFMFSVGIMMQILACALYSNWWPMLTALMYVMVPMPCLFFGSSSSESLLSVGDATGDWADAAKFLTGFS TVGSIAIPAILRHAMLIEIGAMFLAYSSFIILTSTVILFQYVTRESEW* |
CDS seq | >Sm.7548.1 ATGGCGATGACGATCGAAGTGCTTGCTGGACTGGCGTTCATGTTTTCTGTGGGAATTATGATGCAAATCCTGGCTTGTGC CTTGTACAGCAATTGGTGGCCAATGCTCACAGCTCTCATGTACGTGATGGTTCCAATGCCTTGCTTGTTCTTCGGAAGCT CTTCGTCCGAGTCGCTTCTATCTGTCGGCGATGCTACTGGAGACTGGGCTGATGCTGCAAAGTTCCTGACGGGATTTTCA ACCGTGGGAAGCATTGCGATTCCGGCCATTTTGCGCCATGCGATGTTGATAGAGATCGGCGCCATGTTTCTCGCTTACTC GTCTTTCATTATTTTGACGAGCACCGTCATCTTGTTCCAATACGTGACTCGCGAGAGCGAGTGGTAG |