
Microexon ID | Ps_NW_020628818.1:7860999:+ |
Species | Papaver somniferum | Coordinates | NW_020628818.1:7860999..7860999 |
Microexon Cluster ID | MEP02 |
Size | 1 |
Phase | 1 |
Pfam Domain Motif | Vps55 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 19,1,52 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | ATGGCGATGACMRTYGAAGTGCTTGCTGGRCTTGCTTTYATGTTYTCADCBAGYATYYTGYTRCARATMCTG |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | T |
Microexon Amino Acid seq | V |
Microexon-tag DNA Seq | ATGGCTATGTCGGTCGAAGTGCTTGCAGGGCTGGCTTTCATGTTCTCAGCTAGCATTTTATTGCAAATTCTG |
Microexon-tag Amino Acid Seq | MAMSVEVLAGLAFMFSASILLQIL |
Microexon-tag spanning region | 7860534-7862316 |
Microexon-tag prediction score | 0.9552 |
Overlapped with the annotated transcript (%) | 98.61 |
New Transcript ID | XM_026584444.1x |
Reference Transcript ID | XM_026584444.1 |
Gene ID | NA |
Gene Name | NA |
Ps_NW_020628818.1:7860999:+ does not have available information here.
Microexon DNA seq | T |
Microexon Amino Acid seq | V |
Microexon-tag DNA Seq | ATGGCTATGTCGGTCGAAGTGCTTGCAGGGCTGGCTTTCATGTTCTCAGCTAGCATTTTATTGCAAATTCTG |
Microexon-tag Amino Acid seq | MAMSVEVLAGLAFMFSASILLQIL |
Transcript ID | Ps.78178.1 |
Gene ID | Ps.78178 |
Gene Name | NA |
Pfam domain motif | Vps55 |
Motif E-value | 4e-31 |
Motif start | 9 |
Motif end | 120 |
Protein seq | >Ps.78178.1 MAMSVEVLAGLAFMFSASILLQILACAIYSNWWPMLAALMYVMVPMPCLFFGGGSTAFLTSRDGGGWMDAAKFLTGASAV GSIAIPAILRHAGLIETGAMFIEFTSFFILVCTIMCFHRASLEDEW* |
CDS seq | >Ps.78178.1 ATGGCTATGTCGGTCGAAGTGCTTGCAGGGCTGGCTTTCATGTTCTCAGCTAGCATTTTATTGCAAATTCTGGCCTGTGC AATATACAGCAACTGGTGGCCAATGTTGGCAGCTCTGATGTACGTAATGGTGCCTATGCCTTGTTTGTTTTTTGGTGGTG GATCCACTGCATTCTTAACCAGCCGTGATGGTGGAGGCTGGATGGATGCTGCAAAGTTCTTGACAGGAGCATCTGCAGTG GGAAGCATCGCCATTCCTGCAATCCTTAGGCATGCTGGTCTGATCGAAACAGGAGCTATGTTCATTGAGTTCACTTCTTT CTTCATTCTAGTTTGCACTATCATGTGTTTTCATCGTGCTAGTCTTGAAGATGAATGGTGA |