EPCES: Prediction of Antigenic Epitopes on Protein Surfaces by Consensus Scoring

    (Academic use only)
    Currently, the server is very busy, and the computing time for one protein structure could be more than one hour. If you have 100 structures, it might take more than one week to get results. And, maybe, you cannot get any results at all, becuase the server will delete job from the queues if those jobs stay in the queue for a long time, such as one day.

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    Please input PDB ID or your PDB file (Required) *
    PDB ID : (e.g. 1a2p)
    Protein Structure file: (file format must be *.pdb)

    Please input Chain Names (Required) *
    Chain Names: (e.g. A or HL. If the interesting chain name in PDB file is empty, please use _. If all the chains are interesting, please use *)


    * Please input the correct four-letter word shown in figure. It is case insensitivity.
    Usage: give us the unbounded structure either by inputing a PDB ID or by uploading a file.
    Output: The output will be displayed by a web page. The output includes (1) the predicted antigene residues; (2) the color marked PDB file. If one display the PDB file as the B factor color, the residues are colored from red to blue according to the predicted possibility to be an epitope residue.

    Citation: S. Liang, D. Zheng, C. Zhang and M. Zacharias. Prediction of Antigenic Epitopes on Protein Surfaces by Consensus Scoring. BMC Bioinformatics 10, 302 (2009)

    This project has been supported by funding under the Sixth Research Framework Programme of the European Union (ref. LSHB-CT-2006-037325)

    Please address questions or comments to czhang5@unl.edu .

    Copyright (C) 2009-2017