Transcription Factor Family: C3H
Li & Thomas. 1998: We used virtual subtraction, a new gene isolation strategy, to isolate several genes of interest that are expressed in Arabidopsis embryos. These genes have demonstrated biological properties or have the potential to be involved in important biological processes. One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.
There are 83 transcription factors which have been predicted for 3D structure in this family:
| Transcription Factor ID | Gene Description |
| AT1G01350.1 | Description: nucleic acid binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 838964 |
| AT1G03790.1 | Description: SOM (SOMNUS); nucleic acid binding / transcription factor; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839408 |
| AT1G04990.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839351 |
| AT1G04990.2 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839351 |
| AT1G07360.1 | Description: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837248 |
| AT1G10320.1 | Description: U2 snRNP auxiliary factor-related; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837571 |
| AT1G19860.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 838574 |
| AT1G21570.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 838758 |
| AT1G27650.1 | Description: ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839657 |
| AT1G27650.2 | Description: ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839657 |
| AT1G29560.1 | Description: nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839833 |
| AT1G29560.2 | Description: nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839833 |
| AT1G29570.1 | Description: zinc finger protein-related; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839834 |
| AT1G29600.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839837 |
| AT1G30460.1 | Description: CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839925 |
| AT1G30460.2 | Description: CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839925 |
| AT1G32360.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 840128 |
| AT1G48195.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 2745816 |
| AT1G66810.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 842999 |
| AT1G68200.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 843149 |
| AT1G75340.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 843870 |
| AT2G02160.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 814747 |
| AT2G05160.1 | Description: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 815064 |
| AT2G16470.1 | Description: zinc finger (CCCH-type) family protein / GYF domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 816145 |
| AT2G19810.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 816500 |
| AT2G20280.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 816547 |
| AT2G24830.1 | Description: zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817020 |
| AT2G25900.1 | Description: ATCTH; transcription factor; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817131 |
| AT2G28450.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817393 |
| AT2G29580.1 | Description: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817507 |
| AT2G32930.1 | Description: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817855 |
| AT2G33835.1 | Description: FES1; nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817951 |
| AT2G35430.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818109 |
| AT2G40140.1 | Description: CZF1; transcription factor; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818605 |
| AT2G41900.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818790 |
| AT2G47680.1 | Description: zinc finger (CCCH type) helicase family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 819381 |
| AT2G47850.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 819397 |
| AT2G47850.2 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 819397 |
| AT2G47850.3 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 819397 |
| AT3G02830.1 | Description: ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821230 |
| AT3G06410.1 | Description: nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 819815 |
| AT3G08505.1 | Description: zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 819998 |
| AT3G08505.2 | Description: zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 819998 |
| AT3G12130.1 | Description: KH domain-containing protein / zinc finger (CCCH type) family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 820388 |
| AT3G12680.1 | Description: HUA1 (ENHANCER OF AG-4 1); RNA binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 820448 |
| AT3G18640.1 | Description: zinc finger protein-related; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821395 |
| AT3G19360.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821470 |
| AT3G21810.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821735 |
| AT3G27700.1 | Description: RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 822392 |
| AT3G27700.2 | Description: RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 822392 |
| AT3G44785.1 | Description: U2AF splicing factor subunit, putative / U2 auxiliary factor 38 kDa subunit, putative; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 2745945 |
| AT3G47120.1 | Description: RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 823865 |
| AT3G48440.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 824003 |
| AT3G51120.1 | Description: DNA binding / nucleic acid binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 824276 |
| AT3G51950.1 | Description: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 824358 |
| AT3G51950.2 | Description: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 824358 |
| AT3G55980.1 | Description: SZF1 (SALT-INDUCIBLE ZINC FINGER 1); transcription factor; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 824764 |
| AT4G25440.1 | Description: ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 828649 |
| AT4G29190.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 829040 |
| AT5G06420.1 | Description: zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830530 |
| AT5G06420.2 | Description: zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830530 |
| AT5G06770.1 | Description: KH domain-containing protein / zinc finger (CCCH type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830566 |
| AT5G07060.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830597 |
| AT5G07500.1 | Description: PEI1; nucleic acid binding / transcription factor/ zinc-mediated transcriptional activator; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830642 |
| AT5G12440.1 | Description: nucleic acid binding / nucleotide binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831119 |
| AT5G12850.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831125 |
| AT5G16540.1 | Description: ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831516 |
| AT5G16540.2 | Description: ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831516 |
| AT5G16540.3 | Description: ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831516 |
| AT5G18550.1 | Description: nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831973 |
| AT5G40880.1 | Description: WD-40 repeat family protein / zfwd3 protein (ZFWD3); Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834089 |
| AT5G42820.1 | Description: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834293 |
| AT5G42820.2 | Description: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834293 |
| AT5G44260.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834449 |
| AT5G49200.1 | Description: WD-40 repeat family protein / zfwd4 protein (ZFWD4); Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834979 |
| AT5G51980.1 | Description: WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835273 |
| AT5G51980.2 | Description: WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835273 |
| AT5G56900.1 | Description: CwfJ-like family protein / zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835792 |
| AT5G56900.2 | Description: CwfJ-like family protein / zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835792 |
| AT5G56930.1 | Description: emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835795 |
| AT5G58620.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835976 |
| AT5G63260.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836446 |
| AT5G66270.1 | Description: zinc finger (CCCH-type) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836759 |