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Transcription Factor Family: Tify

Nishii et al. 2000: By differential screening of an arrayed normalized cDNA library from the inflorescence apex in Arabidopsis, a cDNA clone having a deduced amino acid sequence with a motif for a zinc finger was isolated as one of the genes expressed specifically in the reproductive phase. The deduced protein has a modular structure with a putative single C2-C2 zinc-finger motif distantly related to a GATA-1-type finger, a basic region with a sequence resembling a nuclear localization signal, and an acidic region. The gene seemed to have been formed by the exon-shuffling during its molecular evolution, since individual domains are encoded by discrete exons. RNA gel blot analysis showed its expression in shoot apex and flowers in the reproductive phase. The gene was named ZIM for Zinc-finger protein expressed in Inflorescence Meristem. The nuclear localization of ZIM was detected using GFP as a reporter. These results suggest that ZIM is a putative transcription factor involved in inflorescence and flower development.

There are 26 transcription factors which have been predicted for 3D structure in this family:

Transcription Factor IDGene Description
AT1G17380.1Description:   JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 838310
AT1G19180.1Description:   JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 838501
AT1G19180.2Description:   JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 838501
AT1G30135.1Description:   JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839893
AT1G48500.1Description:   JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 841271
AT1G48500.2Description:   JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 841271
AT1G48500.3Description:   JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 841271
AT1G70700.1Description:   TIFY7;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843407
AT1G70700.2Description:   TIFY7;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843407
AT1G70700.3Description:   TIFY7;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843407
AT1G72450.1Description:   JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843577
AT1G74950.1Description:   TIFY10B;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843834
AT2G34600.1Description:   JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7);  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 818025
AT3G17860.1Description:   JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3);  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821055
AT3G17860.2Description:   JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3);  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821055
AT3G17860.3Description:   JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3);  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821055
AT3G21175.3Description:   ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821670
AT3G43440.1Description:   JAZ11 (JASMONATE-ZIM-DOMAIN PROTEIN 11);  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 823426
AT4G14713.1Description:   PPD1 (PEAPOD 1); dioxygenase/ metal ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 827123
AT4G14713.2Description:   PPD1 (PEAPOD 1); dioxygenase/ metal ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 827123
AT4G14720.1Description:   PPD2; dioxygenase/ metal ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 827125
AT4G32570.1Description:   TIFY8 (TIFY DOMAIN PROTEIN 8);  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 829392
AT5G13220.1Description:   JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831162
AT5G13220.2Description:   JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831162
AT5G13220.3Description:   JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831162
AT5G20900.1Description:   JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 832214