Transcription Factor Family: Jumonji
Noh et al. 2004: Flowering in Arabidopsis thaliana is controlled by multiple pathways, including the photoperiod pathway and the FLOWERING LOCUS C (FLC)-dependent pathway. Here, we report that a pair of related jumonji-class transcription factors, EARLY FLOWERING 6 (ELF6) and RELATIVE OF EARLY FLOWERING 6 (REF6), play divergent roles in the regulation of Arabidopsis flowering. ELF6 acts as a repressor in the photoperiod pathway, whereas REF6, which has the highest similarity to ELF6, is an FLC repressor. Ectopic expression studies and expression pattern analyses show that ELF6 and REF6 have different cellular roles and are also regulated differentially despite their sequence similarities. Repression of FLC expression by REF6 accompanies histone modifications in FLC chromatin, indicating that the transcriptional regulatory activity of this class of proteins includes chromatin remodeling. This report demonstrates the in vivo functions of this class of proteins in higher eukaryotes.
There are 18 transcription factors which have been predicted for 3D structure in this family:
| Transcription Factor ID | Gene Description |
| AT1G08620.1 | Description: transcription factor; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837384 |
| AT1G09060.1 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837427 |
| AT1G09060.2 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837427 |
| AT1G09060.3 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837427 |
| AT1G11950.1 | Description: transcription factor; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837747 |
| AT1G30810.1 | Description: transcription factor; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 839963 |
| AT1G62310.1 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 842529 |
| AT1G63490.1 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 842655 |
| AT1G78280.1 | Description: transferase, transferring glycosyl groups; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 844163 |
| AT2G34880.1 | Description: MEE27 (maternal effect embryo arrest 27); transcription factor; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818053 |
| AT2G38950.1 | Description: transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818480 |
| AT3G07610.1 | Description: IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 819952 |
| AT4G00990.1 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 827933 |
| AT4G20400.1 | Description: transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 827788 |
| AT4G20400.2 | Description: transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 827788 |
| AT5G06550.1 | Description: hypothetical protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830543 |
| AT5G46910.1 | Description: transcription factor jumonji (jmj) family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834736 |
| AT5G63080.1 | Description: transcription factor jumonji (jmjC) domain-containing protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836428 |