Transcription Factor Family: PHD
Bienz. 2006: PHD proteins seem to be found universally in the nucleus, and their functions tend to lie in the control of chromatin or transcription. Increasing evidence indicates that PHD fingers bind to specific nuclear protein partners, for which they apparently use their loop 2 surface. Perhaps each
There are 59 transcription factors which have been predicted for 3D structure in this family:
| Transcription Factor ID | Gene Description |
| AT1G05380.1 | Description: DNA binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837039 |
| AT1G05380.2 | Description: DNA binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837039 |
| AT1G05830.1 | Description: ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific); Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837093 |
| AT1G05830.2 | Description: ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific); Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 837093 |
| AT1G32810.2 | Description: protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 840175 |
| AT1G33420.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 840235 |
| AT1G43770.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 840971 |
| AT1G43770.2 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 840971 |
| AT1G50620.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 841484 |
| AT1G54390.3 | Description: PHD finger protein-related; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 841881 |
| AT1G54390.4 | Description: PHD finger protein-related; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 841881 |
| AT1G54390.5 | Description: PHD finger protein-related; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 841881 |
| AT1G66170.1 | Description: MMD1 (MALE MEIOCYTE DEATH 1); DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 842932 |
| AT1G68030.1 | Description: PHD finger protein-related; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 843131 |
| AT1G77250.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 844061 |
| AT1G77800.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 844117 |
| AT1G79350.1 | Description: EMB1135 (embryo defective 1135); DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 1; GeneType: Protein Coding; NCBI gene id: 844273 |
| AT2G01810.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 814712 |
| AT2G19260.1 | Description: ELM2 domain-containing protein / PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 816443 |
| AT2G25170.1 | Description: PKL (PICKLE); ATPase/ DNA binding / DNA helicase; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817055 |
| AT2G31650.1 | Description: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 817721 |
| AT2G36720.1 | Description: PHD finger transcription factor, putative; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818244 |
| AT2G37520.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818328 |
| AT2G40770.1 | Description: ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 2; GeneType: Protein Coding; NCBI gene id: 818674 |
| AT3G01460.1 | Description: MBD9; DNA binding / methyl-CpG binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821132 |
| AT3G05670.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 819734 |
| AT3G14740.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 820702 |
| AT3G14740.2 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 820702 |
| AT3G14980.1 | Description: PHD finger transcription factor, putative; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 820727 |
| AT3G20280.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821572 |
| AT3G20280.2 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821572 |
| AT3G24010.1 | Description: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 821986 |
| AT3G53680.1 | Description: PHD finger transcription factor, putative; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 824535 |
| AT3G61740.1 | Description: SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 825347 |
| AT3G61740.2 | Description: SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 3; GeneType: Protein Coding; NCBI gene id: 825347 |
| AT4G12620.1 | Description: ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 826875 |
| AT4G14700.1 | Description: ORC1A (ORIGIN RECOGNITION COMPLEX 1); DNA binding / double-stranded methylated DNA binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 827121 |
| AT4G14920.1 | Description: DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 827150 |
| AT4G22140.1 | Description: DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 828303 |
| AT4G22140.2 | Description: DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 828303 |
| AT4G27910.1 | Description: SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 828904 |
| AT4G39100.1 | Description: SHL1 (short life); transcription factor/ zinc-mediated transcriptional activator; Organism: Arabidopsis thaliana; Chromosome: 4; GeneType: Protein Coding; NCBI gene id: 830065 |
| AT5G09790.1 | Description: ATXR5; DNA binding / protein binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830839 |
| AT5G09790.2 | Description: ATXR5; DNA binding / protein binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 830839 |
| AT5G15540.1 | Description: EMB2773 (EMBRYO DEFECTIVE 2773); binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831407 |
| AT5G16680.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 831529 |
| AT5G22260.1 | Description: MS1 (male sterility 1); DNA binding / transcription factor; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 832286 |
| AT5G24330.1 | Description: ATXR6; DNA binding / protein binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 832503 |
| AT5G36670.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 833632 |
| AT5G36740.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 833643 |
| AT5G44800.1 | Description: CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 834510 |
| AT5G53430.1 | Description: SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835424 |
| AT5G58610.1 | Description: PHD finger transcription factor, putative; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 835975 |
| AT5G60410.1 | Description: SIZ1; DNA binding / SUMO ligase; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836163 |
| AT5G60410.2 | Description: SIZ1; DNA binding / SUMO ligase; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836163 |
| AT5G60410.3 | Description: SIZ1; DNA binding / SUMO ligase; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836163 |
| AT5G60410.4 | Description: SIZ1; DNA binding / SUMO ligase; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836163 |
| AT5G60410.5 | Description: SIZ1; DNA binding / SUMO ligase; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836163 |
| AT5G63900.1 | Description: PHD finger family protein; Organism: Arabidopsis thaliana; Chromosome: 5; GeneType: Protein Coding; NCBI gene id: 836510 |